PDB 1i2t citation summary ‹ Protein Data Bank in Europe (PDBe)

Macromolecular ab initio phasing enforcing secondary and tertiary structure. Millán C, Sammito M, Usón I. IUCrJ 2 95-105 (2015)

Structural basis of binding of P-body-associated proteins GW182 and ataxin-2 by the Mlle domain of poly(A)-binding protein. Kozlov G, Safaee N, Rosenauer A, Gehring K. J Biol Chem 285 13599-13606 (2010)
Computational design of a PAK1 binding protein. Jha RK, Leaver-Fay A, Yin S, Wu Y, Butterfoss GL, Szyperski T, Dokholyan NV, Kuhlman B. J Mol Biol 400 257-270 (2010)
X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein. Deo RC, Sonenberg N, Burley SK. Proc Natl Acad Sci U S A 98 4414-4419 (2001)
Molecular basis of eRF3 recognition by the MLLE domain of poly(A)-binding protein. Kozlov G, Gehring K. PLoS One 5 e10169 (2010)
Protein folding at the membrane interface, the structure of Nogo-66 requires interactions with a phosphocholine surface. Vasudevan SV, Schulz J, Zhou C, Cocco MJ. Proc Natl Acad Sci U S A 107 6847-6851 (2010)
Quantitative characterization of Tob interactions provides the thermodynamic basis for translation termination-coupled deadenylase regulation. Ruan L, Osawa M, Hosoda N, Imai S, Machiyama A, Katada T, Hoshino S, Shimada I. J Biol Chem 285 27624-27631 (2010)
The MLLE domain of the ubiquitin ligase UBR5 binds to its catalytic domain to regulate substrate binding. Muñoz-Escobar J, Matta-Camacho E, Kozlov G, Gehring K. J Biol Chem 290 22841-22850 (2015)
Denatured-state energy landscapes of a protein structural database reveal the energetic determinants of a framework model for folding. Wang S, Gu J, Larson SA, Whitten ST, Hilser VJ. J Mol Biol 381 1184-1201 (2008)
Analysis of the "thermodynamic information content" of a Homo sapiens structural database reveals hierarchical thermodynamic organization. Larson SA, Hilser VJ. Protein Sci 13 1787-1801 (2004)
Solution structure of the C-terminal domain from poly(A)-binding protein in Trypanosoma cruzi: a vegetal PABC domain. Siddiqui N, Kozlov G, D'Orso I, Trempe JF, Gehring K. Protein Sci 12 1925-1933 (2003)
Structure prediction for the helical skeletons detected from the low resolution protein density map. Al Nasr K, Sun W, He J. BMC Bioinformatics 11 Suppl 1 S44 (2010)
MLIMC: Machine Learning-Based Implicit-Solvent Monte Carlo. Chen J, Geng W, Wei GW. Chi J Chem Phys 34 683-694 (2021)
Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction. Tan CW, Jones DT. BMC Bioinformatics 9 94 (2008)
Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures. Sun W, He J. BMC Bioinformatics 10 Suppl 1 S40 (2009)
Evaluating the accuracy of protein design using native secondary sub-structures. Movahedi M, Zare-Mirakabad F, Arab SS. BMC Bioinformatics 17 353 (2016)
The dipeptidyl peptidase IV inhibitors vildagliptin and K-579 inhibit a phospholipase C: a case of promiscuous scaffolds in proteins. Chakraborty S, Rendón-Ramírez A, Ásgeirsson B, Dutta M, Ghosh AS, Oda M, Venkatramani R, Rao BJ, Dandekar AM, Goñi FM. F1000Res 2 286 (2013)

Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression. Mangus DA, Evans MC, Jacobson A. Genome Biol 4 223 (2003)
Eukaryotic translation initiation factors and regulators. Sonenberg N, Dever TE. Curr Opin Struct Biol 13 56-63 (2003)
Mammalian HECT ubiquitin-protein ligases: biological and pathophysiological aspects. Scheffner M, Kumar S. Biochim Biophys Acta 1843 61-74 (2014)
Starting the protein synthesis machine: eukaryotic translation initiation. Preiss T, W Hentze M. Bioessays 25 1201-1211 (2003)
Regulation of poly(A)-binding protein through PABP-interacting proteins. Derry MC, Yanagiya A, Martineau Y, Sonenberg N. Cold Spring Harb Symp Quant Biol 71 537-543 (2006)
HECT E3s and human disease. Scheffner M, Staub O. BMC Biochem 8 Suppl 1 S6 (2007)
The "tale" of poly(A) binding protein: the MLLE domain and PAM2-containing proteins. Xie J, Kozlov G, Gehring K. Biochim Biophys Acta 1839 1062-1068 (2014)
Poly(A) tail synthesis and regulation: recent structural insights. Hall TM. Curr Opin Struct Biol 12 82-88 (2002)
Targeting Protein Synthesis in Colorectal Cancer. Schmidt S, Denk S, Wiegering A. Cancers (Basel) 12 E1298 (2020)
Weighing up the possibilities: Controlling translation by ubiquitylation and sumoylation. Watts FZ, Baldock R, Jongjitwimol J, Morley SJ. Translation (Austin) 2 e959366 (2014)

PABP1 identified as an arginine methyltransferase substrate using high-density protein arrays. Lee J, Bedford MT. EMBO Rep 3 268-273 (2002)
Neural RNA-binding protein Musashi1 inhibits translation initiation by competing with eIF4G for PABP. Kawahara H, Imai T, Imataka H, Tsujimoto M, Matsumoto K, Okano H. J Cell Biol 181 639-653 (2008)
Dual interactions of the translational repressor Paip2 with poly(A) binding protein. Khaleghpour K, Kahvejian A, De Crescenzo G, Roy G, Svitkin YV, Imataka H, O'Connor-McCourt M, Sonenberg N. Mol Cell Biol 21 5200-5213 (2001)
Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles. Muddashetty R, Khanam T, Kondrashov A, Bundman M, Iacoangeli A, Kremerskothen J, Duning K, Barnekow A, Hüttenhofer A, Tiedge H, Brosius J. J Mol Biol 321 433-445 (2002)
Paip1 interacts with poly(A) binding protein through two independent binding motifs. Roy G, De Crescenzo G, Khaleghpour K, Kahvejian A, O'Connor-McCourt M, Sonenberg N. Mol Cell Biol 22 3769-3782 (2002)
Poly(A)-binding protein-interacting protein 1 binds to eukaryotic translation initiation factor 3 to stimulate translation. Martineau Y, Derry MC, Wang X, Yanagiya A, Berlanga JJ, Shyu AB, Imataka H, Gehring K, Sonenberg N. Mol Cell Biol 28 6658-6667 (2008)
Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization. Groft CM, Burley SK. Mol Cell 9 1273-1283 (2002)
Poly(A) binding protein (PABP) homeostasis is mediated by the stability of its inhibitor, Paip2. Yoshida M, Yoshida K, Kozlov G, Lim NS, De Crescenzo G, Pang Z, Berlanga JJ, Kahvejian A, Gehring K, Wing SS, Sonenberg N. EMBO J 25 1934-1944 (2006)
Structural basis of ligand recognition by PABC, a highly specific peptide-binding domain found in poly(A)-binding protein and a HECT ubiquitin ligase. Kozlov G, De Crescenzo G, Lim NS, Siddiqui N, Fantus D, Kahvejian A, Trempe JF, Elias D, Ekiel I, Sonenberg N, O'Connor-McCourt M, Gehring K. EMBO J 23 272-281 (2004)
Survey on the PABC recognition motif PAM2. Albrecht M, Lengauer T. Biochem Biophys Res Commun 316 129-138 (2004)
Poly(A) nuclease interacts with the C-terminal domain of polyadenylate-binding protein domain from poly(A)-binding protein. Siddiqui N, Mangus DA, Chang TC, Palermino JM, Shyu AB, Gehring K. J Biol Chem 282 25067-25075 (2007)
Edd, the murine hyperplastic disc gene, is essential for yolk sac vascularization and chorioallantoic fusion. Saunders DN, Hird SL, Withington SL, Dunwoodie SL, Henderson MJ, Biben C, Sutherland RL, Ormandy CJ, Watts CK. Mol Cell Biol 24 7225-7234 (2004)
Molecular determinants of PAM2 recognition by the MLLE domain of poly(A)-binding protein. Kozlov G, Ménade M, Rosenauer A, Nguyen L, Gehring K. J Mol Biol 397 397-407 (2010)
Translational silencing of ceruloplasmin requires the essential elements of mRNA circularization: poly(A) tail, poly(A)-binding protein, and eukaryotic translation initiation factor 4G. Mazumder B, Seshadri V, Imataka H, Sonenberg N, Fox PL. Mol Cell Biol 21 6440-6449 (2001)
Regulation of poly(A) binding protein function in translation: Characterization of the Paip2 homolog, Paip2B. Berlanga JJ, Baass A, Sonenberg N. RNA 12 1556-1568 (2006)
Four distinct classes of proteins as interaction partners of the PABC domain of Arabidopsis thaliana Poly(A)-binding proteins. Bravo J, Aguilar-Henonin L, Olmedo G, Guzmán P. Mol Genet Genomics 272 651-665 (2005)
The Drosophila poly(A) binding protein-interacting protein, dPaip2, is a novel effector of cell growth. Roy G, Miron M, Khaleghpour K, Lasko P, Sonenberg N. Mol Cell Biol 24 1143-1154 (2004)
Structure of the N-terminal domain of Escherichia coli glutamine synthetase adenylyltransferase. Xu Y, Zhang R, Joachimiak A, Carr PD, Huber T, Vasudevan SG, Ollis DL. Structure 12 861-869 (2004)
NMR structure of bacterial ribosomal protein l20: implications for ribosome assembly and translational control. Raibaud S, Lebars I, Guillier M, Chiaruttini C, Bontems F, Rak A, Garber M, Allemand F, Springer M, Dardel F. J Mol Biol 323 143-151 (2002)
The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation. Hildebrandt A, Brüggemann M, Rücklé C, Boerner S, Heidelberger JB, Busch A, Hänel H, Voigt A, Möckel MM, Möckel MM, Ebersberger S, Scholz A, Dold A, Schmid T, Ebersberger I, Roignant JY, Zarnack K, König J, Beli P. Genome Biol 20 216 (2019)
Identification and characterization of proteins that interact with the carboxy terminus of poly(A)-binding protein and inhibit translation in vitro. Wang X, Grumet R. Plant Mol Biol 54 85-98 (2004)
Identification and expression of the gene for human ataxin-2-related protein on chromosome 16. Figueroa KP, Pulst SM. Exp Neurol 184 669-678 (2003)
Delivering messages from the 3' end. Varani G. Proc Natl Acad Sci U S A 98 4288-4289 (2001)
Poly(A) RNA and Paip2 act as allosteric regulators of poly(A)-binding protein. Lee SH, Oh J, Park J, Paek KY, Rho S, Jang SK, Lee JB. Nucleic Acids Res 42 2697-2707 (2014)
Structural characterization of the late competence protein ComFB from Bacillus subtilis. Sysoeva TA, Bane LB, Xiao DY, Bose B, Chilton SS, Gaudet R, Burton BM. Biosci Rep 35 e00183 (2015)
A functional genomic approach reveals the transcriptional role of EDD in the expression and function of angiogenesis regulator ACVRL1. Chen HW, Yang CC, Hsieh CL, Liu H, Lee SC, Tan BC. Biochim Biophys Acta 1829 1309-1319 (2013)
Harnessing short poly(A)-binding protein-interacting peptides for the suppression of nonsense-mediated mRNA decay. Fatscher T, Gehring NH. Sci Rep 6 37311 (2016)
Crystal Structure of a Variant PAM2 Motif of LARP4B Bound to the MLLE Domain of PABPC1. Grimm C, Pelz JP, Schneider C, Schäffler K, Fischer U. Biomolecules 10 E872 (2020)
A Model for Dimerization of the SOX Group E Transcription Factor Family. Ramsook SN, Ni J, Shahangian S, Vakiloroayaei A, Khan N, Kwan JJ, Donaldson LW. PLoS One 11 e0161432 (2016)
A MademoiseLLE domain binding platform links the key RNA transporter to endosomes. Devan SK, Schott-Verdugo S, Müntjes K, Bismar L, Reiners J, Hachani E, Schmitt L, Höppner A, Smits SH, Gohlke H, Feldbrügge M. PLoS Genet 18 e1010269 (2022)
Cryo-EM structure of the chain-elongating E3 ubiquitin ligase UBR5. Hodáková Z, Grishkovskaya I, Brunner HL, Bolhuis DL, Belačić K, Schleiffer A, Kotisch H, Brown NG, Haselbach D. EMBO J 42 e113348 (2023)
Regulation of the expression of histone H3.3 by differential polyadenylation. Feng R, Tang X, Becker A, Berger A, Ye J, Akhmanova A, Hennig W. Genome 48 503-510 (2005)

Protein Data Bank in Europe

X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein.

Abstract

Reviews - 1i2t mentioned but not cited (1)

Articles - 1i2t mentioned but not cited (16)

Reviews citing this publication (10)

Articles citing this publication (32)

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1i2t › Citations

X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein.

Abstract

Reviews - 1i2t mentioned but not cited (1)

Articles - 1i2t mentioned but not cited (16)

Reviews citing this publication (10)

Articles citing this publication (32)

Quick links