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Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with Pimelate and Succinyl-CoA

X-ray diffraction
2.3Å resolution
PDB entry 1kgt coloured by chain, front view.
PDB entry 1kgt coloured by chain, side view.
PDB entry 1kgt coloured by chain, top view.
Source organism: Mycobacterium tuberculosis variant bovis
Assembly composition:
homo trimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
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Multimeric state: homo trimer
Accessible surface area: 26423.62 Å2
Buried surface area: 19129.61 Å2
Dissociation area: 7,694.67 Å2
Dissociation energy (ΔGdiss): 82.76 kcal/mol
Dissociation entropy (TΔSdiss): 28.92 kcal/mol
Symmetry number: 3
PDBe Complex ID: PDB-CPX-157438

Macromolecules

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
Chain: A
Length: 274 amino acids
Theoretical weight: 29.92 KDa
Source organism: Mycobacterium tuberculosis variant bovis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P56220 (Residues: 1-274; Coverage: 100%)
Gene name: dapD
Pfam:
InterPro:
CATH:
SCOP: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase in PDB entry 1kgt, assembly 1, front view.
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase in PDB entry 1kgt, assembly 1, side view.
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase in PDB entry 1kgt, assembly 1, top view.
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