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Crystal Structure analysis of the ADP-ribose pyrophosphatase complexed with ribose-5'-phosphate and Zn

X-ray diffraction
2.6Å resolution
PDB entry 1v8t coloured by chain, front view.
PDB entry 1v8t coloured by chain, side view.
PDB entry 1v8t coloured by chain, top view.
Source organism: Thermus thermophilus
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Nudix hydrolase domain-containing protein
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Multimeric state: homo dimer
Accessible surface area: 13090.39 Å2
Buried surface area: 5900.63 Å2
Dissociation area: 2,341.53 Å2
Dissociation energy (ΔGdiss): 31.4 kcal/mol
Dissociation entropy (TΔSdiss): 12.72 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-183026

Macromolecules

Nudix hydrolase domain-containing protein
Chain: A
Length: 170 amino acids
Theoretical weight: 19.29 KDa
Source organism: Thermus thermophilus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q84CU3 (Residues: 1-170; Coverage: 100%)
Gene name: ndx4
Pfam: NUDIX domain
InterPro:
CATH: Nucleoside Triphosphate Pyrophosphohydrolase
SCOP: MutT-like
Nudix hydrolase domain-containing protein in PDB entry 1v8t, assembly 1, front view.
Nudix hydrolase domain-containing protein in PDB entry 1v8t, assembly 1, side view.
Nudix hydrolase domain-containing protein in PDB entry 1v8t, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q84CU3  
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