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Nipah virus attachment glycoprotein in complex with human cell surface receptor ephrinB2

X-ray diffraction
1.8Å resolution
PDB entry 2vsm coloured by chain, front view.
PDB entry 2vsm coloured by chain, side view.
PDB entry 2vsm coloured by chain, top view.
Source organisms:
Assembly composition:
hetero dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Ephrin-B2 and Glycoprotein G
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Multimeric state: hetero dimer
Accessible surface area: 23158.66 Å2
Buried surface area: 4168.12 Å2
Dissociation area: 1,396.08 Å2
Dissociation energy (ΔGdiss): 5.97 kcal/mol
Dissociation entropy (TΔSdiss): 12.48 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-156644

Macromolecules

Glycoprotein G
Chain: A
Length: 416 amino acids
Theoretical weight: 46.84 KDa
Source organism: Henipavirus nipahense
Expression system: Homo sapiens
UniProt:
  • Canonical: Q9IH62 (Residues: 188-602; Coverage: 69%)
Gene name: G
Pfam: Haemagglutinin-neuraminidase
InterPro:
CATH: Neuraminidase
Glycoprotein G in PDB entry 2vsm, assembly 1, front view.
Glycoprotein G in PDB entry 2vsm, assembly 1, side view.
Glycoprotein G in PDB entry 2vsm, assembly 1, top view.
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Ephrin-B2
Chain: B
Length: 140 amino acids
Theoretical weight: 16.05 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P52799 (Residues: 28-166; Coverage: 45%)
Gene names: EFNB2, EPLG5, HTKL, LERK5
Pfam: Ephrin
InterPro:
CATH: Cupredoxins - blue copper proteins
Ephrin-B2 in PDB entry 2vsm, assembly 1, front view.
Ephrin-B2 in PDB entry 2vsm, assembly 1, side view.
Ephrin-B2 in PDB entry 2vsm, assembly 1, top view.
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