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Crystal structure of Saporin-L1 from Saponaria officinalis

X-ray diffraction
1.49Å resolution
PDB entry 3his coloured by chain, front view.
PDB entry 3his coloured by chain, side view.
PDB entry 3his coloured by chain, top view.
Source organism: Saponaria officinalis
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: rRNA N-glycosylase
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Multimeric state: monomeric
Accessible surface area: 11395.58 Å2
Buried surface area: 0.0 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-173880
Assembly 2
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Assembly Name: rRNA N-glycosylase
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Multimeric state: monomeric
Accessible surface area: 11095.54 Å2
Buried surface area: 0.0 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-173880

Macromolecules

rRNA N-glycosylase
Chains: A, B
Length: 259 amino acids
Theoretical weight: 28.77 KDa
Source organism: Saponaria officinalis
Expression system: Escherichia coli
UniProt:
  • Canonical: Q2QEH4 (Residues: 22-280; Coverage: 93%)
Gene names: RND81_04G013200, RND81_04G017000
Pfam: Ribosome inactivating protein
InterPro:
CATH:
rRNA N-glycosylase in PDB entry 3his, assembly 1, front view.
rRNA N-glycosylase in PDB entry 3his, assembly 1, side view.
rRNA N-glycosylase in PDB entry 3his, assembly 1, top view.
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