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In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus

Electron Microscopy
3.3Å resolution
PDB entry 3jb6 coloured by chain, front view.
PDB entry 3jb6 coloured by chain, side view.
PDB entry 3jb6 coloured by chain, top view.
Source organism: Bombyx mori cypovirus 1
Assembly composition:
hetero tetramer (preferred)
Entry contents: 3 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero tetramer
Accessible surface area: 67704.62 Å2
Buried surface area: 11339.52 Å2
Dissociation area: 607.35 Å2
Dissociation energy (ΔGdiss): 2.23 kcal/mol
Dissociation entropy (TΔSdiss): 8.3 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-111974

Macromolecules

RdRp catalytic domain-containing protein
Chain: A
Length: 1225 amino acids
Theoretical weight: 138.81 KDa
Source organism: Bombyx mori cypovirus 1
UniProt:
  • Canonical: D0EZK6 (Residues: 1-1225; Coverage: 100%)
Pfam:
InterPro: RNA-directed RNA polymerase, reovirus
RdRp catalytic domain-containing protein in PDB entry 3jb6, assembly 1, front view.
RdRp catalytic domain-containing protein in PDB entry 3jb6, assembly 1, side view.
RdRp catalytic domain-containing protein in PDB entry 3jb6, assembly 1, top view.
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Viral structural protein 4
Chain: B
Length: 561 amino acids
Theoretical weight: 63.68 KDa
Source organism: Bombyx mori cypovirus 1
UniProt:
  • Canonical: Q9IR43 (Residues: 1-561; Coverage: 100%)
Viral structural protein 4 in PDB entry 3jb6, assembly 1, front view.
Viral structural protein 4 in PDB entry 3jb6, assembly 1, side view.
Viral structural protein 4 in PDB entry 3jb6, assembly 1, top view.
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VP1
Chains: C, D
Length: 24 amino acids
Theoretical weight: 2.73 KDa
Source organism: Bombyx mori cypovirus 1
UniProt:
  • Canonical: D3JWE6 (Residues: 111-134; Coverage: 2%)
VP1 in PDB entry 3jb6, assembly 1, front view.
VP1 in PDB entry 3jb6, assembly 1, side view.
VP1 in PDB entry 3jb6, assembly 1, top view.
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