› › Structure analysis

Crystal structure of a putative phosphomethylpyrimidine kinase (BT_4458) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution (rhombohedral form)

X-ray diffraction
2.1Å resolution
PDB entry 3mbj coloured by chain, front view.
PDB entry 3mbj coloured by chain, side view.
PDB entry 3mbj coloured by chain, top view.
Source organism: Bacteroides thetaiotaomicron VPI-5482
Assembly composition:
homo hexamer (preferred)
Entry contents: 1 distinct polypeptide molecule

Quick links

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Assembly Name: pyridoxal kinase
hide full assembly name
Multimeric state: homo hexamer
Accessible surface area: 56829.74 Å2
Buried surface area: 35490.53 Å2
Dissociation area: 5,993.95 Å2
Dissociation energy (ΔGdiss): 39.49 kcal/mol
Dissociation entropy (TΔSdiss): 30.76 kcal/mol
Symmetry number: 6
PDBe Complex ID: PDB-CPX-183577

Macromolecules

pyridoxal kinase
Chain: A
Length: 291 amino acids
Theoretical weight: 33.43 KDa
Source organism: Bacteroides thetaiotaomicron VPI-5482
Expression system: Escherichia coli
UniProt:
  • Canonical: Q89ZB9 (Residues: 1-290; Coverage: 100%)
Gene name: BT_4458
Pfam: Phosphomethylpyrimidine kinase
InterPro:
CATH: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
pyridoxal kinase in PDB entry 3mbj, assembly 1, front view.
pyridoxal kinase in PDB entry 3mbj, assembly 1, side view.
pyridoxal kinase in PDB entry 3mbj, assembly 1, top view.
Molecule details ›

Search similar proteins

Quick links