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Structure of the Deamidase-Depupylase Dop of the Prokaryotic Ubiquitin-like Modification Pathway in Complex with ATP

X-ray diffraction
2.85Å resolution
PDB entry 4b0s coloured by chain, front view.
PDB entry 4b0s coloured by chain, side view.
PDB entry 4b0s coloured by chain, top view.
Source organism: Acidothermus cellulolyticus 11B
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Depupylase
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Multimeric state: monomeric
Accessible surface area: 17704.51 Å2
Buried surface area: 1111.82 Å2
Dissociation area: 75.17 Å2
Dissociation energy (ΔGdiss): 11.93 kcal/mol
Dissociation entropy (TΔSdiss): -1.46 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-106122

Macromolecules

Depupylase
Chain: A
Length: 506 amino acids
Theoretical weight: 57.13 KDa
Source organism: Acidothermus cellulolyticus 11B
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0LU48 (Residues: 1-501; Coverage: 100%)
Gene names: Acel_1186, dop
Pfam: Pup-ligase protein
InterPro:
Depupylase in PDB entry 4b0s, assembly 1, front view.
Depupylase in PDB entry 4b0s, assembly 1, side view.
Depupylase in PDB entry 4b0s, assembly 1, top view.
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