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Structure of B-Lymphotropic Polyomavirus VP1 in complex with 3'-sialyllactosamine

X-ray diffraction
1.75Å resolution
PDB entry 4mbz coloured by chain, front view.
PDB entry 4mbz coloured by chain, side view.
PDB entry 4mbz coloured by chain, top view.
Source organism: B-lymphotropic polyomavirus
Assembly composition:
homo pentamer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1
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Assembly Name: Major capsid protein VP1
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Multimeric state: homo pentamer
Accessible surface area: 52682.49 Å2
Buried surface area: 33305.09 Å2
Dissociation area: 13,740.73 Å2
Dissociation energy (ΔGdiss): 181.45 kcal/mol
Dissociation entropy (TΔSdiss): 58.81 kcal/mol
Symmetry number: 5
PDBe Complex ID: PDB-CPX-137319
Assembly 2 (preferred)
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Assembly Name: Major capsid protein VP1
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Multimeric state: homo pentamer
Accessible surface area: 53719.37 Å2
Buried surface area: 31367.04 Å2
Dissociation area: 13,378.69 Å2
Dissociation energy (ΔGdiss): 181.94 kcal/mol
Dissociation entropy (TΔSdiss): 58.68 kcal/mol
Symmetry number: 5
PDBe Complex ID: PDB-CPX-137319

Macromolecules

Major capsid protein VP1
Chains: A, B, C, D, E, F, G, H, I, J
Length: 278 amino acids
Theoretical weight: 30.13 KDa
Source organism: B-lymphotropic polyomavirus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P04010 (Residues: 29-302; Coverage: 75%)
Pfam: Polyomavirus coat protein
InterPro:
CATH: Capsid protein VP1,Polyomavirus
Major capsid protein VP1 in PDB entry 4mbz, assembly 2, front view.
Major capsid protein VP1 in PDB entry 4mbz, assembly 2, side view.
Major capsid protein VP1 in PDB entry 4mbz, assembly 2, top view.
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