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Formyl-methionine-alanine complex structure of peptide deformylase from Xanthomoonas oryzae pv. oryzae

X-ray diffraction
2.2Å resolution
PDB entry 4nt8 coloured by chain, front view.
PDB entry 4nt8 coloured by chain, side view.
PDB entry 4nt8 coloured by chain, top view.
Source organism: Xanthomonas oryzae pv. oryzae KACC 10331
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Peptide deformylase
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Multimeric state: homo dimer
Accessible surface area: 15075.29 Å2
Buried surface area: 3791.0 Å2
Dissociation area: 1,100.62 Å2
Dissociation energy (ΔGdiss): 12.97 kcal/mol
Dissociation entropy (TΔSdiss): 12.18 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-177161

Macromolecules

Peptide deformylase
Chain: A
Length: 171 amino acids
Theoretical weight: 19.13 KDa
Source organism: Xanthomonas oryzae pv. oryzae KACC 10331
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5H3Z2 (Residues: 42-212; Coverage: 81%)
Gene names: XOO1075, def
Pfam: Polypeptide deformylase
InterPro:
CATH: Peptide deformylase
Peptide deformylase in PDB entry 4nt8, assembly 1, front view.
Peptide deformylase in PDB entry 4nt8, assembly 1, side view.
Peptide deformylase in PDB entry 4nt8, assembly 1, top view.
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