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Refinement of RAGE-DNA complex in 3S59 without DNA

X-ray diffraction
2.803Å resolution
PDB entry 4of5 coloured by chain, front view.
PDB entry 4of5 coloured by chain, side view.
PDB entry 4of5 coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Advanced glycosylation end product-specific receptor
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Multimeric state: monomeric
Accessible surface area: 12601.73 Å2
Buried surface area: 0.0 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-172192
Assembly 2
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Assembly Name: Advanced glycosylation end product-specific receptor
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Multimeric state: monomeric
Accessible surface area: 12984.24 Å2
Buried surface area: 0.0 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-172192

Macromolecules

Advanced glycosylation end product-specific receptor
Chains: A, B
Length: 223 amino acids
Theoretical weight: 24.2 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q15109 (Residues: 23-237; Coverage: 56%)
Gene names: AGER, RAGE
Pfam: CD80-like C2-set immunoglobulin domain
InterPro:
CATH: Immunoglobulins
Advanced glycosylation end product-specific receptor in PDB entry 4of5, assembly 1, front view.
Advanced glycosylation end product-specific receptor in PDB entry 4of5, assembly 1, side view.
Advanced glycosylation end product-specific receptor in PDB entry 4of5, assembly 1, top view.
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