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Crystal structure of Vibrio cholerae adenylation domain AlmE in complex with glycyl-adenosine-5'-phosphate

X-ray diffraction
2.261Å resolution
PDB entry 4oxi coloured by chain, front view.
PDB entry 4oxi coloured by chain, side view.
PDB entry 4oxi coloured by chain, top view.
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: AMP-dependent synthetase/ligase domain-containing protein
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Multimeric state: monomeric
Accessible surface area: 23400.79 Å2
Buried surface area: 787.14 Å2
Dissociation area: 393.57 Å2
Dissociation energy (ΔGdiss): 4.28 kcal/mol
Dissociation entropy (TΔSdiss): 4.81 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-192061

Macromolecules

AMP-dependent synthetase/ligase domain-containing protein
Chain: A
Length: 576 amino acids
Theoretical weight: 65.37 KDa
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9KRQ7 (Residues: 1-556; Coverage: 100%)
Gene name: VC_1579
Pfam: AMP-binding enzyme
InterPro:
CATH:
AMP-dependent synthetase/ligase domain-containing protein in PDB entry 4oxi, assembly 1, front view.
AMP-dependent synthetase/ligase domain-containing protein in PDB entry 4oxi, assembly 1, side view.
AMP-dependent synthetase/ligase domain-containing protein in PDB entry 4oxi, assembly 1, top view.
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