› 4prl

X-ray diffraction
2.6Å resolution

Crystal structure of D-lactate dehydrogenase with NAD+ from Lactobacillus jensenii

Released:
DOI: 10.2210/pdb4prl/pdb
PDB entry 4prl coloured by chain, front view.
PDB entry 4prl coloured by chain, side view.
PDB entry 4prl coloured by chain, top view.
Source organism: Lactobacillus jensenii 1153
Primary publication:
Crystal structure and thermodynamic properties of d-lactate dehydrogenase from Lactobacillus jensenii.
Kim S, Gu SA, Kim YH, Kim KJ
Int J Biol Macromol 68 151-7 (2014)
PMID: 24794195

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-165049 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
4-phosphoerythronate dehydrogenase Chains: A, B
Molecule details ›
Chains: A, B
Length: 336 amino acids
Theoretical weight: 37.1 KDa
Source organism: Lactobacillus jensenii 1153
Expression system: Escherichia coli
Structure domains: NAD(P)-binding Rossmann-like Domain

Ligands and Environments

1 bound ligand:
Ligand NAD 2 x NAD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 7A (6B, 6C1)
Spacegroup: P3121
Unit cell:
a: 90.714Å b: 90.714Å c: 158.183Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.264 0.211 0.278
Expression system: Escherichia coli

Quick links

Citations

5 citation in other articles

Microbial production of d-lactic acid from dried distiller's grains with solubles.
Zaini et al. (2019)
4 more

1 mention without citation

Domain atrophy creates rare cases of functional partial protein domains.
Prakash et al. (2015)