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Yeast 80S ribosome.

X-ray diffraction
4Å resolution
PDB entry 4v7r coloured by chain, front view.
PDB entry 4v7r coloured by chain, side view.
PDB entry 4v7r coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Assemblies composition:
hetero 73-mer (preferred)
hetero 66-mer
Entry contents: 69 distinct polypeptide molecules
4 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 73-mer
Accessible surface area: 807699.96 Å2
Buried surface area: 26597.66 Å2
Dissociation area: 2,876.26 Å2
Dissociation energy (ΔGdiss): -42.8 kcal/mol
Dissociation entropy (TΔSdiss): 114.75 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-292871
Assembly 2
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Multimeric state: hetero 66-mer
Accessible surface area: 801025.38 Å2
Buried surface area: 22068.34 Å2
Dissociation area: 2,057.6 Å2
Dissociation energy (ΔGdiss): -22.43 kcal/mol
Dissociation entropy (TΔSdiss): 81.34 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-292821

Macromolecules

Small ribosomal subunit protein uS2A
Chains: AA, CA
Length: 252 amino acids
Theoretical weight: 28.05 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P32905 (Residues: 1-252; Coverage: 100%)
Gene names: NAB1, NAB1A, RPS0A, YGR214W, YST1
Pfam: Ribosomal protein S2
InterPro:
Small ribosomal subunit protein uS2A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS2A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS2A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P32905  
125220406080100120140160180200220240
 
100200
UniProt
P32905
Chains
Domains
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Small ribosomal subunit protein uS5
Chains: AB, CB
Length: 254 amino acids
Theoretical weight: 27.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25443 (Residues: 1-254; Coverage: 100%)
Gene names: G2893, RPS2, RPS4, SUP38, SUP44, YGL123W
Pfam:
InterPro:
Small ribosomal subunit protein uS5 in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P25443  
125420406080100120140160180200220240
 
100200
UniProt
P25443
Chains
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Small ribosomal subunit protein uS3
Chains: AC, CC
Length: 240 amino acids
Theoretical weight: 26.54 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05750 (Residues: 1-240; Coverage: 100%)
Gene names: N1653, RPS3, SUF14, YNL178W
Pfam:
InterPro:
Small ribosomal subunit protein uS3 in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS3 in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS3 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P05750  
124020406080100120140160180200220240
 
100200
UniProt
P05750
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Small ribosomal subunit protein uS7
Chains: AD, CD
Length: 225 amino acids
Theoretical weight: 25.07 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26783 (Residues: 1-225; Coverage: 100%)
Gene names: J2045, RPS2, RPS5, YJR123W
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7 in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS7 in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS7 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P26783  
122520406080100120140160180200220
 
100200
UniProt
P26783
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Small ribosomal subunit protein uS4A
Chains: AE, CE
Length: 197 amino acids
Theoretical weight: 22.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: O13516 (Residues: 1-197; Coverage: 100%)
Gene names: RPS13A, RPS9A, YPL081W, YS11A
Pfam:
InterPro:
Small ribosomal subunit protein uS4A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS4A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS4A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: O13516  
119720406080100120140160180
 
50100150
UniProt
O13516
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40S ribosomal protein S11
Chains: AF, CF
Length: 156 amino acids
Theoretical weight: 17.79 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
40S ribosomal protein S11 in PDB entry 4v7r, assembly 1, front view.
40S ribosomal protein S11 in PDB entry 4v7r, assembly 1, side view.
40S ribosomal protein S11 in PDB entry 4v7r, assembly 1, top view.
115620406080100120140
 
50100150
Chains
RSRZ Outlier Chain BC (auth CF)
Chain BC (auth CF)
RSRZ Outlier Chain G (auth AF)
Chain G (auth AF)
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Small ribosomal subunit protein uS15
Chains: AG, CG
Length: 151 amino acids
Theoretical weight: 17.06 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05756 (Residues: 1-151; Coverage: 100%)
Gene names: D4252, RPS13, RPS13C, YD9609.18, YDR064W
Pfam:
InterPro:
Small ribosomal subunit protein uS15 in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS15 in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS15 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P05756  
115120406080100120140
 
50100150
UniProt
P05756
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Small ribosomal subunit protein uS11A
Chains: AH, CH
Length: 137 amino acids
Theoretical weight: 14.56 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P06367 (Residues: 1-137; Coverage: 100%)
Gene names: CRY1, RPL59, RPS14A, YCR031C, YCR31C
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS11A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS11A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P06367  
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Small ribosomal subunit protein uS19
Chains: AI, CI
Length: 142 amino acids
Theoretical weight: 16.03 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q01855 (Residues: 1-142; Coverage: 100%)
Gene names: RPS15, RPS21, YOL040C
Pfam: Ribosomal protein S19
InterPro:
Small ribosomal subunit protein uS19 in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS19 in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS19 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q01855  
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40S ribosomal protein S16
Chains: AJ, CJ
Length: 143 amino acids
Theoretical weight: 15.88 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
40S ribosomal protein S16 in PDB entry 4v7r, assembly 1, front view.
40S ribosomal protein S16 in PDB entry 4v7r, assembly 1, side view.
40S ribosomal protein S16 in PDB entry 4v7r, assembly 1, top view.
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Small ribosomal subunit protein eS17A
Chains: AK, CK
Length: 136 amino acids
Theoretical weight: 15.82 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P02407 (Residues: 1-136; Coverage: 100%)
Gene names: RP51A, RPS17A, YML024W
Pfam: Ribosomal S17
InterPro:
Small ribosomal subunit protein eS17A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein eS17A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein eS17A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P02407  
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40S ribosomal protein S18
Chains: AL, CL
Length: 146 amino acids
Theoretical weight: 17.07 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
40S ribosomal protein S18 in PDB entry 4v7r, assembly 1, front view.
40S ribosomal protein S18 in PDB entry 4v7r, assembly 1, side view.
40S ribosomal protein S18 in PDB entry 4v7r, assembly 1, top view.
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Small ribosomal subunit protein eS19A
Chains: AM, CM
Length: 144 amino acids
Theoretical weight: 15.94 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P07280 (Residues: 1-144; Coverage: 100%)
Gene names: RP55A, RPS16AA, RPS19A, YOL121C
Pfam: Ribosomal protein S19e
InterPro:
Small ribosomal subunit protein eS19A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein eS19A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein eS19A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P07280  
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Small ribosomal subunit protein uS10
Chains: AN, CN
Length: 121 amino acids
Theoretical weight: 13.93 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38701 (Residues: 1-121; Coverage: 100%)
Gene names: RPS20, URP2, YHL015W
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10 in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS10 in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS10 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P38701  
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Small ribosomal subunit protein uS8A
Chains: AO, CO
Length: 130 amino acids
Theoretical weight: 14.65 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0W1 (Residues: 1-130; Coverage: 100%)
Gene names: J0355, RPS22A, RPS24, RPS24A, YJL190C
Pfam: Ribosomal protein S8
InterPro:
Small ribosomal subunit protein uS8A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS8A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS8A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P0C0W1  
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40S ribosomal protein S23
Chains: AP, CP
Length: 145 amino acids
Theoretical weight: 16.07 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
40S ribosomal protein S23 in PDB entry 4v7r, assembly 1, front view.
40S ribosomal protein S23 in PDB entry 4v7r, assembly 1, side view.
40S ribosomal protein S23 in PDB entry 4v7r, assembly 1, top view.
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Small ribosomal subunit protein eS25A
Chains: AQ, CQ
Length: 108 amino acids
Theoretical weight: 12.07 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q3E792 (Residues: 1-108; Coverage: 100%)
Gene names: RPS25A, RPS31A, YGR027C
Pfam: S25 ribosomal protein
InterPro:
Small ribosomal subunit protein eS25A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein eS25A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein eS25A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q3E792  
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Small ribosomal subunit protein eS28A
Chains: AR, CR
Length: 67 amino acids
Theoretical weight: 7.61 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q3E7X9 (Residues: 1-67; Coverage: 100%)
Gene names: O3600, RPS28A, RPS33, RPS33A, YOR167C
Pfam: Ribosomal protein S28e
InterPro:
Small ribosomal subunit protein eS28A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein eS28A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein eS28A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q3E7X9  
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Small ribosomal subunit protein uS14A
Chains: AS, CS
Length: 56 amino acids
Theoretical weight: 6.68 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41057 (Residues: 1-56; Coverage: 100%)
Gene names: L8084.11, RPS29A, RPS36A, YLR388W, YS29A
Pfam: Ribosomal protein S14p/S29e
InterPro:
Small ribosomal subunit protein uS14A in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein uS14A in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein uS14A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P41057  
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Small ribosomal subunit protein RACK1
Chains: AT, CT
Length: 319 amino acids
Theoretical weight: 34.84 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38011 (Residues: 1-319; Coverage: 100%)
Gene names: ASC1, CPC2, YM9718.15C, YMR116C
Pfam: WD domain, G-beta repeat
InterPro:
Small ribosomal subunit protein RACK1 in PDB entry 4v7r, assembly 1, front view.
Small ribosomal subunit protein RACK1 in PDB entry 4v7r, assembly 1, side view.
Small ribosomal subunit protein RACK1 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P38011  
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Unassigned secondary structure
Chains: Aa, Bo, Ca
Length: 20 amino acids
Theoretical weight: 1.72 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chains: Ab, Cb
Length: 105 amino acids
Theoretical weight: 8.95 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chains: Ac, Cc
Length: 93 amino acids
Theoretical weight: 7.93 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chains: Ad, Cd
Length: 35 amino acids
Theoretical weight: 3 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chains: Ae, Bj, Dj
Length: 21 amino acids
Theoretical weight: 1.81 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chain: Af
Length: 11 amino acids
Theoretical weight: 954 Da
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chains: Ah, Ch
Length: 41 amino acids
Theoretical weight: 3.51 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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60S ribosomal protein L1
Chains: BA, DA
Length: 217 amino acids
Theoretical weight: 24.52 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L1 in PDB entry 4v7r, assembly 1, front view.
60S ribosomal protein L1 in PDB entry 4v7r, assembly 1, side view.
60S ribosomal protein L1 in PDB entry 4v7r, assembly 1, top view.
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60S ribosomal protein L2
Chains: BB, DB
Length: 254 amino acids
Theoretical weight: 27.46 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L2 in PDB entry 4v7r, assembly 1, front view.
60S ribosomal protein L2 in PDB entry 4v7r, assembly 1, side view.
60S ribosomal protein L2 in PDB entry 4v7r, assembly 1, top view.
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Large ribosomal subunit protein uL3
Chains: BC, DC
Length: 387 amino acids
Theoretical weight: 43.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14126 (Residues: 1-387; Coverage: 100%)
Gene names: MAK8, RPL3, TCM1, YOR063W, YOR29-14
Pfam: Ribosomal protein L3
InterPro:
Large ribosomal subunit protein uL3 in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL3 in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL3 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P14126  
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Large ribosomal subunit protein uL4A
Chains: BD, DD
Length: 362 amino acids
Theoretical weight: 39.16 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P10664 (Residues: 1-362; Coverage: 100%)
Gene names: RPL2, RPL2A, RPL4A, YBR0315, YBR031W
Pfam:
InterPro:
Large ribosomal subunit protein uL4A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL4A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL4A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P10664  
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Large ribosomal subunit protein uL18
Chains: BE, DE
Length: 297 amino acids
Theoretical weight: 33.79 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26321 (Residues: 1-297; Coverage: 100%)
Gene names: LPI14W, RPL1, RPL1A, RPL5, YPL131W
Pfam:
InterPro:
Large ribosomal subunit protein uL18 in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL18 in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL18 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P26321  
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Large ribosomal subunit protein eL6A
Chains: BF, DF
Length: 176 amino acids
Theoretical weight: 20 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02326 (Residues: 1-176; Coverage: 100%)
Gene names: RPL17A, RPL6A, YL16A, YML073C
Pfam: Ribosomal protein L6e
InterPro:
Large ribosomal subunit protein eL6A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL6A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL6A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q02326  
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Large ribosomal subunit protein uL30A
Chains: BG, DG
Length: 244 amino acids
Theoretical weight: 27.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05737 (Residues: 1-244; Coverage: 100%)
Gene names: RPL6A, RPL7A, RPL8A, YGL076C, YL8A
Pfam:
InterPro:
Large ribosomal subunit protein uL30A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL30A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL30A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P05737  
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Large ribosomal subunit protein eL8A
Chains: BH, DH
Length: 256 amino acids
Theoretical weight: 28.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P17076 (Residues: 1-256; Coverage: 100%)
Gene names: MAK7, RPL4A, RPL8A, YHL033C
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Large ribosomal subunit protein eL8A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL8A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL8A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P17076  
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Large ribosomal subunit protein uL6A
Chains: BI, DI
Length: 191 amino acids
Theoretical weight: 21.61 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05738 (Residues: 1-191; Coverage: 100%)
Gene names: RPL8A, RPL9, RPL9A, YGL147C
Pfam: Ribosomal protein L6
InterPro:
Large ribosomal subunit protein uL6A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL6A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL6A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P05738  
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Large ribosomal subunit protein uL16
Chains: BJ, DJ
Length: 221 amino acids
Theoretical weight: 25.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41805 (Residues: 1-221; Coverage: 100%)
Gene names: GRC5, QSR1, RPL10, YLR075W
Pfam: Ribosomal protein L16p/L10e
InterPro:
Large ribosomal subunit protein uL16 in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL16 in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL16 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P41805  
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Large ribosomal subunit protein uL5A
Chains: BK, DK
Length: 174 amino acids
Theoretical weight: 19.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0W9 (Residues: 1-174; Coverage: 100%)
Gene names: P8283.14, RP39A, RPL11A, RPL16A, YPR102C
Pfam:
InterPro:
Large ribosomal subunit protein uL5A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL5A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL5A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P0C0W9  
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Large ribosomal subunit protein eL14A
Chains: BN, DN
Length: 138 amino acids
Theoretical weight: 15.2 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36105 (Residues: 1-138; Coverage: 100%)
Gene names: RPL14A, YKL006W, YKL153
Pfam:
InterPro:
Large ribosomal subunit protein eL14A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL14A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL14A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P36105  
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Large ribosomal subunit protein eL15A
Chains: BO, DO
Length: 204 amino acids
Theoretical weight: 24.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05748 (Residues: 1-204; Coverage: 100%)
Gene names: RPL10A, RPL13A, RPL15A, YL10A, YLR029C
Pfam: Ribosomal L15
InterPro:
Large ribosomal subunit protein eL15A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL15A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL15A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P05748  
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Large ribosomal subunit protein uL13A
Chains: BP, DP
Length: 199 amino acids
Theoretical weight: 22.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26784 (Residues: 1-199; Coverage: 100%)
Gene names: RPL13, RPL16A, RPL21A, YIL133C
Pfam: Ribosomal protein L13
InterPro:
Large ribosomal subunit protein uL13A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL13A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL13A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P26784  
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Large ribosomal subunit protein uL22A
Chains: BQ, DQ
Length: 184 amino acids
Theoretical weight: 20.59 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05740 (Residues: 1-184; Coverage: 100%)
Gene names: RPL17, RPL17A, RPL20A, YKL180W
Pfam: Ribosomal protein L22p/L17e
InterPro:
Large ribosomal subunit protein uL22A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL22A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL22A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P05740  
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60S ribosomal protein L18
Chains: BR, DR
Length: 186 amino acids
Theoretical weight: 20.61 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L18 in PDB entry 4v7r, assembly 1, front view.
60S ribosomal protein L18 in PDB entry 4v7r, assembly 1, side view.
60S ribosomal protein L18 in PDB entry 4v7r, assembly 1, top view.
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60S ribosomal protein L19
Chains: BS, DS
Length: 189 amino acids
Theoretical weight: 21.76 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L19 in PDB entry 4v7r, assembly 1, front view.
60S ribosomal protein L19 in PDB entry 4v7r, assembly 1, side view.
60S ribosomal protein L19 in PDB entry 4v7r, assembly 1, top view.
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Large ribosomal subunit protein eL21A
Chains: BT, DT
Length: 160 amino acids
Theoretical weight: 18.28 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02753 (Residues: 1-160; Coverage: 100%)
Gene names: RPL21A, URP1, YBR1401, YBR191W
Pfam: Ribosomal protein L21e
InterPro:
Large ribosomal subunit protein eL21A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL21A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL21A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q02753  
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60S ribosomal protein L23
Chains: BU, DU
Length: 137 amino acids
Theoretical weight: 14.49 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L23 in PDB entry 4v7r, assembly 1, front view.
60S ribosomal protein L23 in PDB entry 4v7r, assembly 1, side view.
60S ribosomal protein L23 in PDB entry 4v7r, assembly 1, top view.
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Large ribosomal subunit protein eL24A
Chains: BV, DV
Length: 155 amino acids
Theoretical weight: 17.66 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04449 (Residues: 1-155; Coverage: 100%)
Gene names: RP29, RPL24A, RPL30A, YGL031C
Pfam: Ribosomal protein L24e
InterPro:
Large ribosomal subunit protein eL24A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL24A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL24A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P04449  
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Large ribosomal subunit protein uL23
Chains: BW, DW
Length: 142 amino acids
Theoretical weight: 15.79 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04456 (Residues: 1-142; Coverage: 100%)
Gene names: RPL25, YOL127W
Pfam:
InterPro:
Large ribosomal subunit protein uL23 in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL23 in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL23 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P04456  
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Large ribosomal subunit protein uL24A
Chains: BX, DX
Length: 127 amino acids
Theoretical weight: 14.27 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05743 (Residues: 1-127; Coverage: 100%)
Gene names: L8300.4, RPL26, RPL26A, RPL33A, YLR344W
Pfam:
InterPro:
Large ribosomal subunit protein uL24A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL24A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL24A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P05743  
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Large ribosomal subunit protein uL15
Chains: BY, DY
Length: 149 amino acids
Theoretical weight: 16.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P02406 (Residues: 1-149; Coverage: 100%)
Gene names: CYH2, RPL28, YGL103W
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Large ribosomal subunit protein uL15 in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein uL15 in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein uL15 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P02406  
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Large ribosomal subunit protein eL30
Chains: BZ, DZ
Length: 105 amino acids
Theoretical weight: 11.43 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14120 (Residues: 1-105; Coverage: 100%)
Gene names: RPL30, RPL32, YGL030W
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Large ribosomal subunit protein eL30 in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL30 in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL30 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P14120  
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Large ribosomal subunit protein eL31A
Chains: Ba, Da
Length: 113 amino acids
Theoretical weight: 12.98 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C2H8 (Residues: 1-113; Coverage: 100%)
Gene names: D2478, RPL31A, RPL34, RPL34A, YDL075W
Pfam: Ribosomal protein L31e
InterPro:
Large ribosomal subunit protein eL31A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL31A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL31A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P0C2H8  
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Large ribosomal subunit protein eL32
Chains: Bb, Db
Length: 130 amino acids
Theoretical weight: 14.81 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38061 (Residues: 1-130; Coverage: 100%)
Gene names: RPL32, YBL0838, YBL092W
Pfam: Ribosomal protein L32
InterPro:
Large ribosomal subunit protein eL32 in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL32 in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL32 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P38061  
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60S ribosomal protein L35
Chains: Bc, Dc
Length: 120 amino acids
Theoretical weight: 13.94 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L35 in PDB entry 4v7r, assembly 1, front view.
60S ribosomal protein L35 in PDB entry 4v7r, assembly 1, side view.
60S ribosomal protein L35 in PDB entry 4v7r, assembly 1, top view.
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Large ribosomal subunit protein eL37A
Chains: Bd, Dd
Length: 88 amino acids
Theoretical weight: 9.88 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P49166 (Residues: 1-88; Coverage: 100%)
Gene names: L9470.6, RPL35A, RPL37A, YLR185W
Pfam: Ribosomal protein L37e
InterPro:
Large ribosomal subunit protein eL37A in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL37A in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL37A in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P49166  
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Large ribosomal subunit protein eL39
Chains: Be, De
Length: 51 amino acids
Theoretical weight: 6.36 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04650 (Residues: 1-51; Coverage: 100%)
Gene names: J0360, RPL39, RPL46, SPB2, YJL189W
Pfam: Ribosomal L39 protein
InterPro:
Large ribosomal subunit protein eL39 in PDB entry 4v7r, assembly 1, front view.
Large ribosomal subunit protein eL39 in PDB entry 4v7r, assembly 1, side view.
Large ribosomal subunit protein eL39 in PDB entry 4v7r, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P04650  
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60S ribosomal protein L42
Chains: Bf, Df
Length: 106 amino acids
Theoretical weight: 12.25 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L42 in PDB entry 4v7r, assembly 1, front view.
60S ribosomal protein L42 in PDB entry 4v7r, assembly 1, side view.
60S ribosomal protein L42 in PDB entry 4v7r, assembly 1, top view.
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60S ribosomal protein L43
Chains: Bg, Dg
Length: 92 amino acids
Theoretical weight: 10.11 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L43 in PDB entry 4v7r, assembly 1, front view.
60S ribosomal protein L43 in PDB entry 4v7r, assembly 1, side view.
60S ribosomal protein L43 in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chains: Bh, Dh
Length: 44 amino acids
Theoretical weight: 3.76 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chains: Bi, Di
Length: 12 amino acids
Theoretical weight: 1.04 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chains: Bk, Dk
Length: 16 amino acids
Theoretical weight: 1.38 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chain: Bl
Length: 19 amino acids
Theoretical weight: 1.64 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chain: Bm
Length: 9 amino acids
Theoretical weight: 784 Da
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chain: Bn
Length: 27 amino acids
Theoretical weight: 2.32 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chain: Bp
Length: 8 amino acids
Theoretical weight: 699 Da
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chain: Bq
Length: 17 amino acids
Theoretical weight: 1.46 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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Unassigned secondary structure
Chain: Br
Length: 23 amino acids
Theoretical weight: 1.98 KDa
Source organism: Saccharomyces cerevisiae
Unassigned secondary structure in PDB entry 4v7r, assembly 1, front view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, side view.
Unassigned secondary structure in PDB entry 4v7r, assembly 1, top view.
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60S ribosomal protein L12
Chain: DL
Length: 165 amino acids
Theoretical weight: 17.85 KDa
Source organism: Saccharomyces cerevisiae
InterPro:
60S ribosomal protein L12 in PDB entry 4v7r, assembly 2, front view.
60S ribosomal protein L12 in PDB entry 4v7r, assembly 2, side view.
60S ribosomal protein L12 in PDB entry 4v7r, assembly 2, top view.
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Large ribosomal subunit protein uL10
Chain: DM
Length: 312 amino acids
Theoretical weight: 33.8 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05317 (Residues: 1-312; Coverage: 100%)
Gene names: L10E, L8300.8, RPA0, RPL10E, RPLA0, RPP0, YLR340W
Pfam:
InterPro:
Large ribosomal subunit protein uL10 in PDB entry 4v7r, assembly 2, front view.
Large ribosomal subunit protein uL10 in PDB entry 4v7r, assembly 2, side view.
Large ribosomal subunit protein uL10 in PDB entry 4v7r, assembly 2, top view.
PDBe-KB: UniProt Coverage View: P05317  
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RNA chains A1, C1
Name: 18S Ribosomal RNA
Representative chains: A1, C1
Length: 1800 nucleotides
Theoretical weight: 579.76 KDa
Rfam: Eukaryotic small subunit ribosomal RNA
18S Ribosomal RNA in PDB entry 4v7r, assembly 1, front view.
18S Ribosomal RNA in PDB entry 4v7r, assembly 1, side view.
18S Ribosomal RNA in PDB entry 4v7r, assembly 1, top view.
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RNA chains B1, D1
Name: 25S ribosomal RNA
Representative chains: B1, D1
Length: 3396 nucleotides
Theoretical weight: 1097.49 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
25S ribosomal RNA in PDB entry 4v7r, assembly 1, front view.
25S ribosomal RNA in PDB entry 4v7r, assembly 1, side view.
25S ribosomal RNA in PDB entry 4v7r, assembly 1, top view.
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RNA chains B2, D2
Name: 5S ribosomal RNA
Representative chains: B2, D2
Length: 121 nucleotides
Theoretical weight: 38.95 KDa
Rfam: 5S ribosomal RNA
5S ribosomal RNA in PDB entry 4v7r, assembly 1, front view.
5S ribosomal RNA in PDB entry 4v7r, assembly 1, side view.
5S ribosomal RNA in PDB entry 4v7r, assembly 1, top view.
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RNA chains B3, D3
Name: 5.8S ribosomal RNA
Representative chains: B3, D3
Length: 158 nucleotides
Theoretical weight: 50.68 KDa
Rfam: 5.8S ribosomal RNA
5.8S ribosomal RNA in PDB entry 4v7r, assembly 1, front view.
5.8S ribosomal RNA in PDB entry 4v7r, assembly 1, side view.
5.8S ribosomal RNA in PDB entry 4v7r, assembly 1, top view.
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