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Crystal structure of Myc3(5-242) fragment in complex with Jaz9(218-239) peptide

X-ray diffraction
2.4Å resolution
PDB entry 4ywc coloured by chain, front view.
PDB entry 4ywc coloured by chain, side view.
PDB entry 4ywc coloured by chain, top view.
Source organism: Arabidopsis thaliana
Assembly composition:
hetero dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Protein TIFY 7 and Transcription factor MYC3
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Multimeric state: hetero dimer
Accessible surface area: 10625.92 Å2
Buried surface area: 1621.92 Å2
Dissociation area: 810.96 Å2
Dissociation energy (ΔGdiss): 4.52 kcal/mol
Dissociation entropy (TΔSdiss): 9.03 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-186663
Assembly 2
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Assembly Name: Protein TIFY 7 and Transcription factor MYC3
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Multimeric state: hetero dimer
Accessible surface area: 10838.81 Å2
Buried surface area: 1692.02 Å2
Dissociation area: 846.01 Å2
Dissociation energy (ΔGdiss): 3.44 kcal/mol
Dissociation entropy (TΔSdiss): 9.05 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-186663

Macromolecules

Transcription factor MYC3
Chains: A, B
Length: 238 amino acids
Theoretical weight: 25.95 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9FIP9 (Residues: 5-242; Coverage: 40%)
Gene names: ATR2, At5g46760, BHLH5, EN36, MYC3, MZA15.18
Pfam: bHLH-MYC and R2R3-MYB transcription factors N-terminal
InterPro:
Transcription factor MYC3 in PDB entry 4ywc, assembly 1, front view.
Transcription factor MYC3 in PDB entry 4ywc, assembly 1, side view.
Transcription factor MYC3 in PDB entry 4ywc, assembly 1, top view.
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Protein TIFY 7
Chains: C, D
Length: 22 amino acids
Theoretical weight: 2.62 KDa
Source organism: Arabidopsis thaliana
Expression system: Not provided
UniProt:
  • Canonical: Q8W4J8 (Residues: 218-239; Coverage: 8%)
Gene names: At1g70700, F5A18.12, JAZ9, TIFY7
Pfam: Jas motif
InterPro: CO/COL/TOC1, conserved site
Protein TIFY 7 in PDB entry 4ywc, assembly 1, front view.
Protein TIFY 7 in PDB entry 4ywc, assembly 1, side view.
Protein TIFY 7 in PDB entry 4ywc, assembly 1, top view.
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