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Crystal structure of BRD9 Bromodomain bound to a crotonyllysine peptide

X-ray diffraction
1.52Å resolution
PDB entry 4yyd coloured by chain, front view.
PDB entry 4yyd coloured by chain, side view.
PDB entry 4yyd coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
hetero dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Bromodomain-containing protein 9 and Histone H4
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Multimeric state: hetero dimer
Accessible surface area: 6966.06 Å2
Buried surface area: 1076.64 Å2
Dissociation area: 538.32 Å2
Dissociation energy (ΔGdiss): -1.13 kcal/mol
Dissociation entropy (TΔSdiss): 7.27 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-158686

Macromolecules

Bromodomain-containing protein 9
Chain: A
Length: 108 amino acids
Theoretical weight: 12.44 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9H8M2 (Residues: 134-239; Coverage: 18%)
Gene names: BRD9, UNQ3040/PRO9856
Pfam: Bromodomain
InterPro:
CATH: Bromodomain-like
Bromodomain-containing protein 9 in PDB entry 4yyd, assembly 1, front view.
Bromodomain-containing protein 9 in PDB entry 4yyd, assembly 1, side view.
Bromodomain-containing protein 9 in PDB entry 4yyd, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9H8M2  
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Histone H4
Chain: Z
Length: 11 amino acids
Theoretical weight: 1.11 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P62805 (Residues: 2-12; Coverage: 11%)
Gene names: H4-16, H4/A, H4/B, H4/C, H4/D, H4/E, H4/G, H4/H, H4/I, H4/J, H4/K, H4/M, H4/N, H4/O, H4C1, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4F2, H4FA, H4FB, H4FC, H4FD, H4FE, H4FG, H4FH, H4FI, H4FJ, H4FK, H4FM, H4FN, H4FO, HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4H, HIST1H4I, HIST1H4J, HIST1H4K, HIST1H4L, HIST2H4, HIST2H4A, HIST2H4B, HIST4H4
Histone H4 in PDB entry 4yyd, assembly 1, front view.
Histone H4 in PDB entry 4yyd, assembly 1, side view.
Histone H4 in PDB entry 4yyd, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P62805  
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