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Crystallographic structure of apo human rotavirus K8 VP8*

X-ray diffraction
1.8Å resolution
PDB entry 5caz coloured by chain, front view.
PDB entry 5caz coloured by chain, side view.
PDB entry 5caz coloured by chain, top view.
Source organism: Rotavirus A K8/G1
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Outer capsid protein VP8*
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Multimeric state: monomeric
Accessible surface area: 8089.4 Å2
Buried surface area: 1646.48 Å2
Dissociation area: 98.39 Å2
Dissociation energy (ΔGdiss): -2.46 kcal/mol
Dissociation entropy (TΔSdiss): -0.39 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-169607

Macromolecules

Outer capsid protein VP8*
Chain: A
Length: 161 amino acids
Theoretical weight: 18.38 KDa
Source organism: Rotavirus A K8/G1
Expression system: Escherichia coli
UniProt:
  • Canonical: Q01641 (Residues: 64-224; Coverage: 21%)
Pfam: Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain
InterPro: Concanavalin A-like lectin/glucanase domain superfamily
CATH: Jelly Rolls
Outer capsid protein VP8* in PDB entry 5caz, assembly 1, front view.
Outer capsid protein VP8* in PDB entry 5caz, assembly 1, side view.
Outer capsid protein VP8* in PDB entry 5caz, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q01641  
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