GO terms
Biochemical function:
Biological process:
Cellular component:
Sequence families
Protein families (Pfam)
![The deposited structure of PDB entry 5lj3 contains 2 copies of Pfam domain PF01423 (LSM domain ) in Small nuclear ribonucleoprotein-associated protein B. Showing 1 copy in chain V [auth b].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_22_b_Pfam_PF01423_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of Pfam domain <span class='highlight'>PF01423 (LSM domain )</span> in <span class='highlight'>Small nuclear ribonucleoprotein-associated protein B</span>. Showing 1 copy in chain <span class='highlight'>V [auth b]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of Pfam domain PF01423 (LSM domain ) in Small nuclear ribonucleoprotein Sm D3. Showing 1 copy in chain HA [auth n].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_23_n_Pfam_PF01423_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of Pfam domain <span class='highlight'>PF01423 (LSM domain )</span> in <span class='highlight'>Small nuclear ribonucleoprotein Sm D3</span>. Showing 1 copy in chain <span class='highlight'>HA [auth n]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of Pfam domain PF01423 (LSM domain ) in Small nuclear ribonucleoprotein E. Showing 1 copy in chain IA [auth p].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_24_p_Pfam_PF01423_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of Pfam domain <span class='highlight'>PF01423 (LSM domain )</span> in <span class='highlight'>Small nuclear ribonucleoprotein E</span>. Showing 1 copy in chain <span class='highlight'>IA [auth p]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of Pfam domain PF01423 (LSM domain ) in Small nuclear ribonucleoprotein F. Showing 1 copy in chain JA [auth q].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_25_q_Pfam_PF01423_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of Pfam domain <span class='highlight'>PF01423 (LSM domain )</span> in <span class='highlight'>Small nuclear ribonucleoprotein F</span>. Showing 1 copy in chain <span class='highlight'>JA [auth q]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of Pfam domain PF01423 (LSM domain ) in Small nuclear ribonucleoprotein G. Showing 1 copy in chain KA [auth r].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_26_r_Pfam_PF01423_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of Pfam domain <span class='highlight'>PF01423 (LSM domain )</span> in <span class='highlight'>Small nuclear ribonucleoprotein G</span>. Showing 1 copy in chain <span class='highlight'>KA [auth r]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of Pfam domain PF01423 (LSM domain ) in Small nuclear ribonucleoprotein Sm D1. Showing 1 copy in chain AA [auth h].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_27_h_Pfam_PF01423_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of Pfam domain <span class='highlight'>PF01423 (LSM domain )</span> in <span class='highlight'>Small nuclear ribonucleoprotein Sm D1</span>. Showing 1 copy in chain <span class='highlight'>AA [auth h]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of Pfam domain PF01423 (LSM domain ) in Small nuclear ribonucleoprotein Sm D2. Showing 1 copy in chain GA [auth m].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_28_m_Pfam_PF01423_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of Pfam domain <span class='highlight'>PF01423 (LSM domain )</span> in <span class='highlight'>Small nuclear ribonucleoprotein Sm D2</span>. Showing 1 copy in chain <span class='highlight'>GA [auth m]</span>.")
![The deposited structure of PDB entry 5lj3 contains 5 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in Pre-mRNA-splicing factor PRP46. Showing 5 copies in chain L [auth J].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_12_J_Pfam_PF00400_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 5 copies of Pfam domain <span class='highlight'>PF00400 (WD domain, G-beta repeat)</span> in <span class='highlight'>Pre-mRNA-splicing factor PRP46</span>. Showing 5 copies in chain <span class='highlight'>L [auth J]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF05843 (Suppressor of forked protein (Suf)) in Pre-mRNA-splicing factor CLF1. Showing 1 copy in chain T [auth S].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_20_S_Pfam_PF05843_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF05843 (Suppressor of forked protein (Suf))</span> in <span class='highlight'>Pre-mRNA-splicing factor CLF1</span>. Showing 1 copy in chain <span class='highlight'>T [auth S]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF05843 (Suppressor of forked protein (Suf)) in Pre-mRNA-splicing factor SYF1. Showing 1 copy in chain U [auth T].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_21_T_Pfam_PF05843_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF05843 (Suppressor of forked protein (Suf))</span> in <span class='highlight'>Pre-mRNA-splicing factor SYF1</span>. Showing 1 copy in chain <span class='highlight'>U [auth T]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of Pfam domain PF00249 (Myb-like DNA-binding domain) in Pre-mRNA-splicing factor CEF1. Showing 2 copies in chain Q [auth O].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_17_O_Pfam_PF00249_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of Pfam domain <span class='highlight'>PF00249 (Myb-like DNA-binding domain)</span> in <span class='highlight'>Pre-mRNA-splicing factor CEF1</span>. Showing 2 copies in chain <span class='highlight'>Q [auth O]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF13893 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)) in U2 small nuclear ribonucleoprotein B''. Showing 1 copy in chain DA [auth Y].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_30_Y_Pfam_PF13893_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF13893 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain))</span> in <span class='highlight'>U2 small nuclear ribonucleoprotein B''</span>. Showing 1 copy in chain <span class='highlight'>DA [auth Y]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF14580 (Leucine-rich repeat) in U2 small nuclear ribonucleoprotein A'. Showing 1 copy in chain CA [auth W].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_29_W_Pfam_PF14580_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF14580 (Leucine-rich repeat)</span> in <span class='highlight'>U2 small nuclear ribonucleoprotein A'</span>. Showing 1 copy in chain <span class='highlight'>CA [auth W]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF08312 (cwf21 domain) in Pre-mRNA-splicing factor CWC21. Showing 1 copy in chain S [auth R].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_19_R_Pfam_PF08312_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF08312 (cwf21 domain)</span> in <span class='highlight'>Pre-mRNA-splicing factor CWC21</span>. Showing 1 copy in chain <span class='highlight'>S [auth R]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF04889 (Cwf15/Cwc15 cell cycle control protein) in Pre-mRNA-splicing factor CWC15. Showing 1 copy in chain R [auth P].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_18_P_Pfam_PF04889_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF04889 (Cwf15/Cwc15 cell cycle control protein)</span> in <span class='highlight'>Pre-mRNA-splicing factor CWC15</span>. Showing 1 copy in chain <span class='highlight'>R [auth P]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF11831 (pre-mRNA splicing factor component) in Pre-mRNA-splicing factor CEF1. Showing 1 copy in chain Q [auth O] (this domain is out of the observed residue ranges!).](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_17_O_Pfam_PF11831_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF11831 (pre-mRNA splicing factor component)</span> in <span class='highlight'>Pre-mRNA-splicing factor CEF1</span>. Showing 1 copy in chain <span class='highlight'>Q [auth O]</span> (this domain is out of the observed residue ranges!).")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF21369 (STL11, N-terminal) in Pre-mRNA-splicing factor SLT11. Showing 1 copy in chain P [auth N].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_16_N_Pfam_PF21369_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF21369 (STL11, N-terminal)</span> in <span class='highlight'>Pre-mRNA-splicing factor SLT11</span>. Showing 1 copy in chain <span class='highlight'>P [auth N]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF00076 (RNA recognition motif) in Pre-mRNA-splicing factor CWC2. Showing 1 copy in chain O [auth M].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_15_M_Pfam_PF00076_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF00076 (RNA recognition motif)</span> in <span class='highlight'>Pre-mRNA-splicing factor CWC2</span>. Showing 1 copy in chain <span class='highlight'>O [auth M]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF16131 (Torus domain) in Pre-mRNA-splicing factor CWC2. Showing 1 copy in chain O [auth M].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_15_M_Pfam_PF16131_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF16131 (Torus domain)</span> in <span class='highlight'>Pre-mRNA-splicing factor CWC2</span>. Showing 1 copy in chain <span class='highlight'>O [auth M]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF01125 (Pre-mRNA-splicing factor BUD31) in Pre-mRNA-splicing factor BUD31. Showing 1 copy in chain N [auth L].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_14_L_Pfam_PF01125_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF01125 (Pre-mRNA-splicing factor BUD31)</span> in <span class='highlight'>Pre-mRNA-splicing factor BUD31</span>. Showing 1 copy in chain <span class='highlight'>N [auth L]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF02731 (SKIP/SNW domain) in Pre-mRNA-processing protein 45. Showing 1 copy in chain M [auth K].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_13_K_Pfam_PF02731_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF02731 (SKIP/SNW domain)</span> in <span class='highlight'>Pre-mRNA-processing protein 45</span>. Showing 1 copy in chain <span class='highlight'>M [auth K]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF06246 (Isy1-like splicing family) in Pre-mRNA-splicing factor ISY1. Showing 1 copy in chain J [auth G].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_10_G_Pfam_PF06246_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF06246 (Isy1-like splicing family)</span> in <span class='highlight'>Pre-mRNA-splicing factor ISY1</span>. Showing 1 copy in chain <span class='highlight'>J [auth G]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF12542 (Pre-mRNA splicing factor) in Pre-mRNA-splicing factor CWC25. Showing 1 copy in chain H [auth F] (this domain is out of the observed residue ranges!).](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_8_F_Pfam_PF12542_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF12542 (Pre-mRNA splicing factor)</span> in <span class='highlight'>Pre-mRNA-splicing factor CWC25</span>. Showing 1 copy in chain <span class='highlight'>H [auth F]</span> (this domain is out of the observed residue ranges!).")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF10197 (N-terminal domain of CBF1 interacting co-repressor CIR) in Pre-mRNA-splicing factor CWC25. Showing 1 copy in chain H [auth F].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_8_F_Pfam_PF10197_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF10197 (N-terminal domain of CBF1 interacting co-repressor CIR)</span> in <span class='highlight'>Pre-mRNA-splicing factor CWC25</span>. Showing 1 copy in chain <span class='highlight'>H [auth F]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF04502 (Saf4/Yju2 protein ) in Splicing factor YJU2. Showing 1 copy in chain G [auth D].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_7_D_Pfam_PF04502_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF04502 (Saf4/Yju2 protein )</span> in <span class='highlight'>Splicing factor YJU2</span>. Showing 1 copy in chain <span class='highlight'>G [auth D]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF00679 (Elongation factor G C-terminus) in Pre-mRNA-splicing factor SNU114. Showing 1 copy in chain I [auth C].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_9_C_Pfam_PF00679_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF00679 (Elongation factor G C-terminus)</span> in <span class='highlight'>Pre-mRNA-splicing factor SNU114</span>. Showing 1 copy in chain <span class='highlight'>I [auth C]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF03764 (Elongation factor G, domain IV) in Pre-mRNA-splicing factor SNU114. Showing 1 copy in chain I [auth C].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_9_C_Pfam_PF03764_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF03764 (Elongation factor G, domain IV)</span> in <span class='highlight'>Pre-mRNA-splicing factor SNU114</span>. Showing 1 copy in chain <span class='highlight'>I [auth C]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF00009 (Elongation factor Tu GTP binding domain) in Pre-mRNA-splicing factor SNU114. Showing 1 copy in chain I [auth C].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_9_C_Pfam_PF00009_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF00009 (Elongation factor Tu GTP binding domain)</span> in <span class='highlight'>Pre-mRNA-splicing factor SNU114</span>. Showing 1 copy in chain <span class='highlight'>I [auth C]</span>.")
PF16004
Domain description:
116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Occurring in:
Occurring in:
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF16004 (116 kDa U5 small nuclear ribonucleoprotein component N-terminus) in Pre-mRNA-splicing factor SNU114. Showing 1 copy in chain I [auth C].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_9_C_Pfam_PF16004_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF16004 (116 kDa U5 small nuclear ribonucleoprotein component N-terminus)</span> in <span class='highlight'>Pre-mRNA-splicing factor SNU114</span>. Showing 1 copy in chain <span class='highlight'>I [auth C]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF08084 (PROCT (NUC072) domain) in Pre-mRNA-splicing factor 8. Showing 1 copy in chain F [auth A] (this domain is out of the observed residue ranges!).](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_6_A_Pfam_PF08084_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF08084 (PROCT (NUC072) domain)</span> in <span class='highlight'>Pre-mRNA-splicing factor 8</span>. Showing 1 copy in chain <span class='highlight'>F [auth A]</span> (this domain is out of the observed residue ranges!).")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF12134 (PRP8 domain IV core) in Pre-mRNA-splicing factor 8. Showing 1 copy in chain F [auth A].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_6_A_Pfam_PF12134_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF12134 (PRP8 domain IV core)</span> in <span class='highlight'>Pre-mRNA-splicing factor 8</span>. Showing 1 copy in chain <span class='highlight'>F [auth A]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF10596 (U6-snRNA interacting domain of PrP8) in Pre-mRNA-splicing factor 8. Showing 1 copy in chain F [auth A].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_6_A_Pfam_PF10596_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF10596 (U6-snRNA interacting domain of PrP8)</span> in <span class='highlight'>Pre-mRNA-splicing factor 8</span>. Showing 1 copy in chain <span class='highlight'>F [auth A]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF10597 (U5-snRNA binding site 2 of PrP8) in Pre-mRNA-splicing factor 8. Showing 1 copy in chain F [auth A].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_6_A_Pfam_PF10597_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF10597 (U5-snRNA binding site 2 of PrP8)</span> in <span class='highlight'>Pre-mRNA-splicing factor 8</span>. Showing 1 copy in chain <span class='highlight'>F [auth A]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF10598 (RNA recognition motif of the spliceosomal PrP8) in Pre-mRNA-splicing factor 8. Showing 1 copy in chain F [auth A].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_6_A_Pfam_PF10598_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF10598 (RNA recognition motif of the spliceosomal PrP8)</span> in <span class='highlight'>Pre-mRNA-splicing factor 8</span>. Showing 1 copy in chain <span class='highlight'>F [auth A]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF08083 (PROCN (NUC071) domain) in Pre-mRNA-splicing factor 8. Showing 1 copy in chain F [auth A].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_6_A_Pfam_PF08083_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF08083 (PROCN (NUC071) domain)</span> in <span class='highlight'>Pre-mRNA-splicing factor 8</span>. Showing 1 copy in chain <span class='highlight'>F [auth A]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Pfam domain PF08082 (PRO8NT (NUC069), PrP8 N-terminal domain) in Pre-mRNA-splicing factor 8. Showing 1 copy in chain F [auth A].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_6_A_Pfam_PF08082_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Pfam domain <span class='highlight'>PF08082 (PRO8NT (NUC069), PrP8 N-terminal domain)</span> in <span class='highlight'>Pre-mRNA-splicing factor 8</span>. Showing 1 copy in chain <span class='highlight'>F [auth A]</span>.")
RNA families (Rfam)
![The deposited structure of PDB entry 5lj3 contains 1 copy of Rfam domain RF00020 (U5 spliceosomal RNA) in U5 snRNA (small nuclear RNA). Showing 1 copy in chain A [auth U].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_1_U_Rfam_RF00020_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Rfam domain <span class='highlight'>RF00020 (U5 spliceosomal RNA)</span> in <span class='highlight'>U5 snRNA (small nuclear RNA)</span>. Showing 1 copy in chain <span class='highlight'>A [auth U]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Rfam domain RF00026 (U6 spliceosomal RNA) in U6 snRNA (small nuclear RNA). Showing 1 copy in chain E [auth V].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_5_V_Rfam_RF00026_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Rfam domain <span class='highlight'>RF00026 (U6 spliceosomal RNA)</span> in <span class='highlight'>U6 snRNA (small nuclear RNA)</span>. Showing 1 copy in chain <span class='highlight'>E [auth V]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of Rfam domain RF00004 (U2 spliceosomal RNA) in U2 snRNA (small nuclear RNA). Showing 1 copy in chain D [auth Z].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_4_Z_Rfam_RF00004_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of Rfam domain <span class='highlight'>RF00004 (U2 spliceosomal RNA)</span> in <span class='highlight'>U2 snRNA (small nuclear RNA)</span>. Showing 1 copy in chain <span class='highlight'>D [auth Z]</span>.")
InterPro annotations
IPR021786
Domain description:
Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminal
Occurring in:
Occurring in:
IPR047240
Domain description:
Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domain
Occurring in:
Occurring in:
IPR035655
Domain description:
116kDa U5 small nuclear ribonucleoprotein component, C-terminal
Occurring in:
Occurring in:
IPR014721
Domain description:
Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
Occurring in:
Occurring in:
IPR031950
Domain description:
116kDa U5 small nuclear ribonucleoprotein component, N-terminal
Occurring in:
Occurring in:
IPR042516
Domain description:
Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
Occurring in:
Occurring in:
Structure domains
CATH domains
2.30.30.100
Class:
Mainly Beta
Architecture:
Roll
Topology:
SH3 type barrels.
Homology:
SH3 type barrels.
Occurring in:
![The deposited structure of PDB entry 5lj3 contains 2 copies of CATH domain 2.30.30.100 (SH3 type barrels.) in Small nuclear ribonucleoprotein Sm D3. Showing 1 copy in chain W [auth d].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_23_d_CATH_2.30.30.100_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of CATH domain <span class='highlight'>2.30.30.100 (SH3 type barrels.)</span> in <span class='highlight'>Small nuclear ribonucleoprotein Sm D3</span>. Showing 1 copy in chain <span class='highlight'>W [auth d]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of CATH domain 2.30.30.100 (SH3 type barrels.) in Small nuclear ribonucleoprotein E. Showing 1 copy in chain X [auth e].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_24_e_CATH_2.30.30.100_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of CATH domain <span class='highlight'>2.30.30.100 (SH3 type barrels.)</span> in <span class='highlight'>Small nuclear ribonucleoprotein E</span>. Showing 1 copy in chain <span class='highlight'>X [auth e]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of CATH domain 2.30.30.100 (SH3 type barrels.) in Small nuclear ribonucleoprotein F. Showing 1 copy in chain Y [auth f].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_25_f_CATH_2.30.30.100_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of CATH domain <span class='highlight'>2.30.30.100 (SH3 type barrels.)</span> in <span class='highlight'>Small nuclear ribonucleoprotein F</span>. Showing 1 copy in chain <span class='highlight'>Y [auth f]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of CATH domain 2.30.30.100 (SH3 type barrels.) in Small nuclear ribonucleoprotein G. Showing 1 copy in chain Z [auth g].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_26_g_CATH_2.30.30.100_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of CATH domain <span class='highlight'>2.30.30.100 (SH3 type barrels.)</span> in <span class='highlight'>Small nuclear ribonucleoprotein G</span>. Showing 1 copy in chain <span class='highlight'>Z [auth g]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of CATH domain 2.30.30.100 (SH3 type barrels.) in Small nuclear ribonucleoprotein Sm D1. Showing 1 copy in chain AA [auth h].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_27_h_CATH_2.30.30.100_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of CATH domain <span class='highlight'>2.30.30.100 (SH3 type barrels.)</span> in <span class='highlight'>Small nuclear ribonucleoprotein Sm D1</span>. Showing 1 copy in chain <span class='highlight'>AA [auth h]</span>.")
![The deposited structure of PDB entry 5lj3 contains 2 copies of CATH domain 2.30.30.100 (SH3 type barrels.) in Small nuclear ribonucleoprotein Sm D2. Showing 1 copy in chain BA [auth j].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_28_j_CATH_2.30.30.100_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 2 copies of CATH domain <span class='highlight'>2.30.30.100 (SH3 type barrels.)</span> in <span class='highlight'>Small nuclear ribonucleoprotein Sm D2</span>. Showing 1 copy in chain <span class='highlight'>BA [auth j]</span>.")
3.30.70.330
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Alpha-Beta Plaits
Homology:
Alpha-Beta Plaits
Occurring in:
![The deposited structure of PDB entry 5lj3 contains 1 copy of CATH domain 3.30.70.330 (Alpha-Beta Plaits) in U2 small nuclear ribonucleoprotein B''. Showing 1 copy in chain DA [auth Y].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_30_Y_CATH_3.30.70.330_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of CATH domain <span class='highlight'>3.30.70.330 (Alpha-Beta Plaits)</span> in <span class='highlight'>U2 small nuclear ribonucleoprotein B''</span>. Showing 1 copy in chain <span class='highlight'>DA [auth Y]</span>.")
![The deposited structure of PDB entry 5lj3 contains 1 copy of CATH domain 2.130.10.10 (Methylamine Dehydrogenase; Chain H) in Pre-mRNA-splicing factor PRP46. Showing 1 copy in chain L [auth J].](https://www.ebi.ac.uk/pdbe/static/entry/5lj3_12_J_CATH_2.130.10.10_image-200x200.png "The deposited structure of PDB entry <span class='highlight'>5lj3</span> contains 1 copy of CATH domain <span class='highlight'>2.130.10.10 (Methylamine Dehydrogenase; Chain H)</span> in <span class='highlight'>Pre-mRNA-splicing factor PRP46</span>. Showing 1 copy in chain <span class='highlight'>L [auth J]</span>.")