5lq8

X-ray diffraction
1.52Å resolution

1.52 A resolution structure of PhnD1 from Prochlorococcus marinus (MIT 9301) in complex with methylphosphonate

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-107199 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Probable ABC transporter phosphite binding protein PhnD1 Chain: A
Molecule details ›
Chain: A
Length: 282 amino acids
Theoretical weight: 32.33 KDa
Source organism: Prochlorococcus marinus str. MIT 9301
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A3PC74 (Residues: 25-297; Coverage: 100%)
Gene names: P9301_07261, phnD1
Sequence domains: ABC transporter, phosphonate, periplasmic substrate-binding protein

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I24
Spacegroup: P21
Unit cell:
a: 45.86Å b: 57.08Å c: 54.17Å
α: 90° β: 106.56° γ: 90°
R-values:
R R work R free
0.16 0.158 0.207
Expression system: Escherichia coli BL21(DE3)