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1.52 A resolution structure of PhnD1 from Prochlorococcus marinus (MIT 9301) in complex with methylphosphonate

X-ray diffraction
1.52Å resolution
PDB entry 5lq8 coloured by chain, front view.
PDB entry 5lq8 coloured by chain, side view.
PDB entry 5lq8 coloured by chain, top view.
Source organism: Prochlorococcus marinus str. MIT 9301
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Probable ABC transporter phosphite binding protein PhnD1
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Multimeric state: monomeric
Accessible surface area: 12505.77 Å2
Buried surface area: 359.15 Å2
Dissociation area: 66.86 Å2
Dissociation energy (ΔGdiss): -1.51 kcal/mol
Dissociation entropy (TΔSdiss): 0.61 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-107199

Macromolecules

Probable ABC transporter phosphite binding protein PhnD1
Chain: A
Length: 282 amino acids
Theoretical weight: 32.33 KDa
Source organism: Prochlorococcus marinus str. MIT 9301
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A3PC74 (Residues: 25-297; Coverage: 100%)
Gene names: P9301_07261, phnD1
Pfam: ABC transporter, phosphonate, periplasmic substrate-binding protein
InterPro:
Probable ABC transporter phosphite binding protein PhnD1 in PDB entry 5lq8, assembly 1, front view.
Probable ABC transporter phosphite binding protein PhnD1 in PDB entry 5lq8, assembly 1, side view.
Probable ABC transporter phosphite binding protein PhnD1 in PDB entry 5lq8, assembly 1, top view.
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