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Poliovirus type 3 (strain Saukett) stabilized virus-like particle

Electron Microscopy
3.6Å resolution
PDB entry 5o5b coloured by chain, front view.
PDB entry 5o5b coloured by chain, side view.
PDB entry 5o5b coloured by chain, top view.
Source organism: Poliovirus 3
Assembly composition:
hetero 240-mer (preferred)
Entry contents: 4 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Capsid proteins and Capsid protein VP2
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Multimeric state: hetero 240-mer
PDBe Complex ID: PDB-CPX-136733

Macromolecules

Capsid proteins
Chain: 1
Length: 300 amino acids
Theoretical weight: 33.56 KDa
Source organism: Poliovirus 3
Expression system: Nicotiana benthamiana
UniProt:
  • Canonical: Q84895 (Residues: 579-878; Coverage: 34%)
Pfam: picornavirus capsid protein
InterPro:
CATH: Jelly Rolls
Capsid proteins in PDB entry 5o5b, assembly 1, front view.
Capsid proteins in PDB entry 5o5b, assembly 1, side view.
Capsid proteins in PDB entry 5o5b, assembly 1, top view.
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Capsid proteins
Chain: 2
Length: 271 amino acids
Theoretical weight: 30.19 KDa
Source organism: Poliovirus 3
Expression system: Nicotiana benthamiana
UniProt:
  • Canonical: Q84895 (Residues: 70-340; Coverage: 31%)
Pfam: picornavirus capsid protein
InterPro:
CATH: Jelly Rolls
Capsid proteins in PDB entry 5o5b, assembly 1, front view.
Capsid proteins in PDB entry 5o5b, assembly 1, side view.
Capsid proteins in PDB entry 5o5b, assembly 1, top view.
Molecule details ›

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Capsid proteins
Chain: 3
Length: 238 amino acids
Theoretical weight: 26.32 KDa
Source organism: Poliovirus 3
Expression system: Nicotiana benthamiana
UniProt:
  • Canonical: Q84895 (Residues: 341-578; Coverage: 27%)
Pfam: picornavirus capsid protein
InterPro:
CATH: Jelly Rolls
Capsid proteins in PDB entry 5o5b, assembly 1, front view.
Capsid proteins in PDB entry 5o5b, assembly 1, side view.
Capsid proteins in PDB entry 5o5b, assembly 1, top view.
Molecule details ›

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Capsid protein VP4
Chain: 4
Length: 69 amino acids
Theoretical weight: 7.45 KDa
Source organism: Poliovirus 3
Expression system: Nicotiana benthamiana
UniProt:
  • Canonical: P03302 (Residues: 1-69; Coverage: 3%)
Pfam: Picornavirus coat protein (VP4)
InterPro:
Capsid protein VP4 in PDB entry 5o5b, assembly 1, front view.
Capsid protein VP4 in PDB entry 5o5b, assembly 1, side view.
Capsid protein VP4 in PDB entry 5o5b, assembly 1, top view.
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