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PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434834

X-ray diffraction
1.877Å resolution
PDB entry 5sdf coloured by chain, front view.
PDB entry 5sdf coloured by chain, side view.
PDB entry 5sdf coloured by chain, top view.
Source organism: Porphyromonas gingivalis
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Asp/Glu-specific dipeptidyl-peptidase
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Multimeric state: homo dimer
Accessible surface area: 56426.47 Å2
Buried surface area: 1796.83 Å2
Dissociation area: 684.62 Å2
Dissociation energy (ΔGdiss): -8.99 kcal/mol
Dissociation entropy (TΔSdiss): 15.39 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-109706

Macromolecules

Asp/Glu-specific dipeptidyl-peptidase
Chains: A, B
Length: 707 amino acids
Theoretical weight: 80.75 KDa
Source organism: Porphyromonas gingivalis
Expression system: Escherichia coli
UniProt:
  • Canonical: B2RID1 (Residues: 22-720; Coverage: 100%)
Gene names: PGN_0607, dpp11
Pfam: Peptidase S46
InterPro:
Asp/Glu-specific dipeptidyl-peptidase in PDB entry 5sdf, assembly 1, front view.
Asp/Glu-specific dipeptidyl-peptidase in PDB entry 5sdf, assembly 1, side view.
Asp/Glu-specific dipeptidyl-peptidase in PDB entry 5sdf, assembly 1, top view.
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