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Crystal structure of B. subtilis 168 GlpQ in complex with glycerol-3-phosphate (5 minute soak)

X-ray diffraction
1.62Å resolution
PDB entry 5t9b coloured by chain, front view.
PDB entry 5t9b coloured by chain, side view.
PDB entry 5t9b coloured by chain, top view.
Source organism: Bacillus subtilis subsp. subtilis str. 168
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Glycerophosphodiester phosphodiesterase
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Multimeric state: monomeric
Accessible surface area: 11190.29 Å2
Buried surface area: 612.06 Å2
Dissociation area: 211.16 Å2
Dissociation energy (ΔGdiss): 7.39 kcal/mol
Dissociation entropy (TΔSdiss): 2.36 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-153524

Macromolecules

Glycerophosphodiester phosphodiesterase
Chain: G
Length: 268 amino acids
Theoretical weight: 30.2 KDa
Source organism: Bacillus subtilis subsp. subtilis str. 168
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P37965 (Residues: 27-293; Coverage: 100%)
Gene names: BSU02130, glpQ, ybeD
Pfam: Glycerophosphoryl diester phosphodiesterase family
InterPro:
CATH: Phosphatidylinositol (PI) phosphodiesterase
Glycerophosphodiester phosphodiesterase in PDB entry 5t9b, assembly 1, front view.
Glycerophosphodiester phosphodiesterase in PDB entry 5t9b, assembly 1, side view.
Glycerophosphodiester phosphodiesterase in PDB entry 5t9b, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P37965  
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