› 5vmb

X-ray diffraction
2.5Å resolution

Crystal structure of a glycine hydroxymethyltransferase from Acinetobacter baumannii

Released:
DOI: 10.2210/pdb5vmb/pdb
PDB entry 5vmb coloured by chain, front view.
PDB entry 5vmb coloured by chain, side view.
PDB entry 5vmb coloured by chain, top view.
Source organism: Acinetobacter baumannii
Entry author: Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Function and Biology Details

Reaction catalysed: 
5,10-methylenetetrahydrofolate + glycine + H(2)O = tetrahydrofolate + L-serine
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-197640 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Serine hydroxymethyltransferase Chain: A
Molecule details ›
Chain: A
Length: 425 amino acids
Theoretical weight: 46.08 KDa
Source organism: Acinetobacter baumannii
Expression system: Escherichia coli
UniProt:
  • Canonical: V5VBJ2 (Residues: 1-417; Coverage: 100%)
Gene names: A7M90_04720, ABR2091_2493, ABUW_1333, APD17_17255, AUO97_00455, B9W25_05820, B9X95_16385, CBE85_00370, CV954_006065, DOL94_04740, EA706_00855, EA722_04005, EJ507_14605, F2P40_02110, F4T85_00485, FJU42_09815, G3N53_09830, GNY86_18470, GSE42_13680, IAG11_02380, JHZ39_000903, LV35_02351, MKP18_000318, P9867_01620, SAMEA4394745_01948, glyA, glyA2
Sequence domains: Serine hydroxymethyltransferase
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: P64
Unit cell:
a: 95.84Å b: 95.84Å c: 109.69Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.187 0.182 0.233
Expression system: Escherichia coli

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