› 5yt8

X-ray diffraction
2.76Å resolution

Crystal structure of H5 hemagglutinin with G228S Q226L mutants from A/chicken/Taiwan/0502/2012

Released:
DOI: 10.2210/pdb5yt8/pdb
PDB entry 5yt8 coloured by chain, front view.
PDB entry 5yt8 coloured by chain, side view.
PDB entry 5yt8 coloured by chain, top view.
Source organism: Influenza A virus (A/chicken/Taiwan/0502/2012(H5N2))
Entry authors: Lin TH, Lee MS, Wu WG, Liu JS

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-100275 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hemagglutinin HA1 chain Chain: A
Molecule details ›
Chain: A
Length: 586 amino acids
Theoretical weight: 66.35 KDa
Source organism: Influenza A virus (A/chicken/Taiwan/0502/2012(H5N2))
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: A0A059VBQ9 (Residues: 15-516; Coverage: 89%)
Gene name: HA
Sequence domains: Haemagglutinin
Structure domains: Hemagglutinin (Ha1 Chain); Chain: A; domain 1

Ligands and Environments

1 bound ligand:
Ligand NAG 1 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSRRC BEAMLINE BL15A1
Spacegroup: R32
Unit cell:
a: 111.17Å b: 111.17Å c: 313.782Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.202 0.199 0.254
Expression system: Spodoptera frugiperda

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