› › Structure analysis

HLA-DRB1*1402 in complex with Vimentin-64Cit59-71

X-ray diffraction
1.98Å resolution
PDB entry 6ati coloured by chain, front view.
PDB entry 6ati coloured by chain, side view.
PDB entry 6ati coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
hetero trimer (preferred)
Entry contents: 3 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero trimer
Accessible surface area: 18399.59 Å2
Buried surface area: 8012.61 Å2
Dissociation area: 1,318.87 Å2
Dissociation energy (ΔGdiss): 6.03 kcal/mol
Dissociation entropy (TΔSdiss): 8.45 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-100805
Assembly 2
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Multimeric state: hetero trimer
Accessible surface area: 18488.03 Å2
Buried surface area: 7949.34 Å2
Dissociation area: 1,323.61 Å2
Dissociation energy (ΔGdiss): 5.8 kcal/mol
Dissociation entropy (TΔSdiss): 8.45 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-100805

Macromolecules

HLA class II histocompatibility antigen, DR alpha chain
Chains: A, D
Length: 189 amino acids
Theoretical weight: 21.92 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P01903 (Residues: 26-206; Coverage: 79%)
Gene names: HLA-DRA, HLA-DRA1
Pfam:
InterPro:
CATH:
HLA class II histocompatibility antigen, DR alpha chain in PDB entry 6ati, assembly 1, front view.
HLA class II histocompatibility antigen, DR alpha chain in PDB entry 6ati, assembly 1, side view.
HLA class II histocompatibility antigen, DR alpha chain in PDB entry 6ati, assembly 1, top view.
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Ig-like domain-containing protein
Chains: B, E
Length: 200 amino acids
Theoretical weight: 23.07 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: A0A0A1I7H6 (Residues: 30-219; Coverage: 80%)
Gene name: HLA-DRB1
Pfam:
InterPro:
CATH:
Ig-like domain-containing protein in PDB entry 6ati, assembly 1, front view.
Ig-like domain-containing protein in PDB entry 6ati, assembly 1, side view.
Ig-like domain-containing protein in PDB entry 6ati, assembly 1, top view.
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Vimentin
Chains: C, F
Length: 13 amino acids
Theoretical weight: 1.44 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P08670 (Residues: 59-71; Coverage: 3%)
Gene name: VIM
Vimentin in PDB entry 6ati, assembly 1, front view.
Vimentin in PDB entry 6ati, assembly 1, side view.
Vimentin in PDB entry 6ati, assembly 1, top view.
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