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Crystal structure of a frog ependymin related protein

X-ray diffraction
2Å resolution
PDB entry 6jl9 coloured by chain, front view.
PDB entry 6jl9 coloured by chain, side view.
PDB entry 6jl9 coloured by chain, top view.
Source organism: Xenopus tropicalis
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Mammalian ependymin-related protein 1
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Multimeric state: homo dimer
Accessible surface area: 19933.54 Å2
Buried surface area: 4615.1 Å2
Dissociation area: 2,196.4 Å2
Dissociation energy (ΔGdiss): 6.76 kcal/mol
Dissociation entropy (TΔSdiss): 13.15 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-123651

Macromolecules

Mammalian ependymin-related protein 1
Chain: A
Length: 196 amino acids
Theoretical weight: 22.84 KDa
Source organism: Xenopus tropicalis
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: F6VRB7 (Residues: 37-220; Coverage: 96%)
Gene name: epdr1
Pfam: Ependymin
InterPro: Ependymin
Mammalian ependymin-related protein 1 in PDB entry 6jl9, assembly 1, front view.
Mammalian ependymin-related protein 1 in PDB entry 6jl9, assembly 1, side view.
Mammalian ependymin-related protein 1 in PDB entry 6jl9, assembly 1, top view.
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