PDB 6jma experiment details and validation ‹ Protein Data Bank in Europe (PDBe) ‹ EMBL-EBI

Electron Microscopy

Source organisms:

Resolution: 6.8Å

Entry percentile scores

Electron Microscopy

Sample information

Author description:

cryo-EM structure of DOT1L bound to H2B ubiquitinated nucleosome

Source organisms:

Expression system:

Escherichia coli BL21

Validation information

Metric	Description
Bond angles in protein, DNA, RNA molecules	84 outliers of 20897 (0.40%)
Bond lengths in protein, DNA, RNA molecules	27 outliers of 14758 (0.18%)
Ramachandran outliers in protein molecules	15 outliers of 1150 (1.30%)
Sidechain rotamer outliers in protein molecules	29 outliers of 1000 (2.90%)

Experimental information

Quick links

View

Close

Archive mmCIF file
Updated mmCIF file
PDB file
PDB header
Assembly composition XML
FASTA (Entry)
Summary report (PDF)
Full report (PDF)
Percentile plot (PNG)
Percentile plot (SVG)

6jma @ RCSB
6jma @ PDBj
6jma @ PDBSum
6jma @ Proteopedia

Downloads

Close

Archive mmCIF file
Updated mmCIF file
PDB file
PDB header
PDB file (gz)
PDBML
PDBML (ATOM lines)
PDBML (no atoms)
Assembly composition XML
Assembly 1 (mmCIF; gz)
Assembly 1 (atom only; mmCIF)
FASTA (Entry)
SIFTS XML file with residue-level mappings
Summary report (PDF)
Full report (PDF)
Percentile plot (PNG)
Percentile plot (SVG)
Validation data (XML)

3D Visualisation