› › Structure analysis

In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP_RNA)

Electron Microscopy
5.2Å resolution
PDB entry 6oj5 coloured by chain, front view.
PDB entry 6oj5 coloured by chain, side view.
PDB entry 6oj5 coloured by chain, top view.
Source organism: Simian rotavirus A strain RRV
Assembly composition:
hetero undecamer (preferred)
Entry contents: 2 distinct polypeptide molecules

Quick links

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Assembly Name: RNA-directed RNA polymerase and Inner capsid protein VP2
hide full assembly name
Multimeric state: hetero undecamer
Accessible surface area: 386707.06 Å2
Buried surface area: 69878.7 Å2
Dissociation area: 6,332.83 Å2
Dissociation energy (ΔGdiss): 18.87 kcal/mol
Dissociation entropy (TΔSdiss): 19.81 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-109838

Macromolecules

Inner capsid protein VP2
Chains: A, B, C, D, E, F, G, H, I, J
Length: 887 amino acids
Theoretical weight: 103.43 KDa
Source organism: Simian rotavirus A strain RRV
UniProt:
  • Canonical: B3F2X3 (Residues: 1-887; Coverage: 100%)
Pfam: Rotavirus VP2 protein
InterPro: Rotavirus VP2
Inner capsid protein VP2 in PDB entry 6oj5, assembly 1, front view.
Inner capsid protein VP2 in PDB entry 6oj5, assembly 1, side view.
Inner capsid protein VP2 in PDB entry 6oj5, assembly 1, top view.
Molecule details ›

Search similar proteins

RNA-directed RNA polymerase
Chain: P
Length: 1088 amino acids
Theoretical weight: 125.28 KDa
Source organism: Simian rotavirus A strain RRV
UniProt:
  • Canonical: B3F2X2 (Residues: 1-1088; Coverage: 100%)
Pfam:
InterPro:
RNA-directed RNA polymerase in PDB entry 6oj5, assembly 1, front view.
RNA-directed RNA polymerase in PDB entry 6oj5, assembly 1, side view.
RNA-directed RNA polymerase in PDB entry 6oj5, assembly 1, top view.
Molecule details ›

Search similar proteins

Quick links