6oj6

Electron Microscopy
4.2Å resolution

In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP_RNA)

Released:
Related structures: EMD-20089

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tridecamer (preferred)
PDBe Complex ID:
PDB-CPX-109839 (preferred)
Entry contents:
2 distinct polypeptide molecules
2 distinct RNA molecules
Macromolecules (4 distinct):
Inner capsid protein VP2 Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 887 amino acids
Theoretical weight: 103.43 KDa
Source organism: Simian rotavirus A strain RRV
UniProt:
  • Canonical: B3F2X3 (Residues: 1-887; Coverage: 100%)
Sequence domains: Rotavirus VP2 protein
RNA-directed RNA polymerase Chain: P
Molecule details ›
Chain: P
Length: 1088 amino acids
Theoretical weight: 125.28 KDa
Source organism: Simian rotavirus A strain RRV
UniProt:
  • Canonical: B3F2X2 (Residues: 1-1088; Coverage: 100%)
Sequence domains:
Template Chain: T
Molecule details ›
Chain: T
Length: 14 nucleotides
Theoretical weight: 4.58 KDa
Transcript Chain: U
Molecule details ›
Chain: U
Length: 10 nucleotides
Theoretical weight: 3.09 KDa

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.2Å
Relevant EMDB volumes: EMD-20089