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Vaccine-elicited NHP FP-targeting antibody 13N024-a.01 in complex with HIV fusion peptide (residue 512-519)

X-ray diffraction
1.953Å resolution
PDB entry 6pdu coloured by chain, front view.
PDB entry 6pdu coloured by chain, side view.
PDB entry 6pdu coloured by chain, top view.
Source organisms:
Assembly composition:
hetero trimer (preferred)
Entry contents: 3 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Transmembrane protein gp41 and IG-light kappa chain and IG-heavy chain
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Multimeric state: hetero trimer
Accessible surface area: 19369.22 Å2
Buried surface area: 4744.0 Å2
Dissociation area: 668.75 Å2
Dissociation energy (ΔGdiss): 5.88 kcal/mol
Dissociation entropy (TΔSdiss): 6.38 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-209082

Macromolecules

antibody 13N024-a.01, light chain
Chain: L
Length: 219 amino acids
Theoretical weight: 23.86 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
InterPro:
antibody 13N024-a.01, light chain in PDB entry 6pdu, assembly 1, front view.
antibody 13N024-a.01, light chain in PDB entry 6pdu, assembly 1, side view.
antibody 13N024-a.01, light chain in PDB entry 6pdu, assembly 1, top view.
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antibody 13N024-a.01, heavy chain
Chain: H
Length: 216 amino acids
Theoretical weight: 22.82 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
InterPro:
antibody 13N024-a.01, heavy chain in PDB entry 6pdu, assembly 1, front view.
antibody 13N024-a.01, heavy chain in PDB entry 6pdu, assembly 1, side view.
antibody 13N024-a.01, heavy chain in PDB entry 6pdu, assembly 1, top view.
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Transmembrane protein gp41
Chain: C
Length: 8 amino acids
Theoretical weight: 733 Da
Source organism: Human immunodeficiency virus 1
Expression system: Not provided
UniProt:
  • Canonical: P04578 (Residues: 512-519; Coverage: 1%)
Gene name: env
Transmembrane protein gp41 in PDB entry 6pdu, assembly 1, front view.
Transmembrane protein gp41 in PDB entry 6pdu, assembly 1, side view.
Transmembrane protein gp41 in PDB entry 6pdu, assembly 1, top view.
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