Function and Biology

Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form

Source organisms:
Biochemical function: sigma factor activity
Biological process: regulation of DNA-templated transcription initiation
Cellular component: not assigned

Sequence families

Pfam Protein families (Pfam)
PF22802
Domain description: RsiG-like
Occurring in:
  1. RsiG-like domain-containing protein

PF04545
Domain description: Sigma-70, region 4
Occurring in:
  1. RNA polymerase sigma factor
The deposited structure of PDB entry 6pfv contains 3 copies of Pfam domain PF04545 (Sigma-70, region 4) in RNA polymerase sigma factor. Showing 1 copy in chain F [auth G].

PF04539
Domain description: Sigma-70 region 3
Occurring in:
  1. RNA polymerase sigma factor
The deposited structure of PDB entry 6pfv contains 3 copies of Pfam domain PF04539 (Sigma-70 region 3) in RNA polymerase sigma factor. Showing 1 copy in chain F [auth G].

PF04542
Domain description: Sigma-70 region 2
Occurring in:
  1. RNA polymerase sigma factor
The deposited structure of PDB entry 6pfv contains 3 copies of Pfam domain PF04542 (Sigma-70 region 2 ) in RNA polymerase sigma factor. Showing 1 copy in chain F [auth G].

InterPro InterPro annotations
IPR000943
Domain description: RNA polymerase sigma-70
Occurring in:
  1. RNA polymerase sigma factor
IPR013324
Domain description: RNA polymerase sigma factor, region 3/4-like
Occurring in:
  1. RNA polymerase sigma factor
IPR007630
Domain description: RNA polymerase sigma-70 region 4
Occurring in:
  1. RNA polymerase sigma factor
IPR007624
Domain description: RNA polymerase sigma-70 region 3
Occurring in:
  1. RNA polymerase sigma factor
IPR012845
Domain description: RNA polymerase sigma factor, FliA/WhiG
Occurring in:
  1. RNA polymerase sigma factor
IPR007627
Domain description: RNA polymerase sigma-70 region 2
Occurring in:
  1. RNA polymerase sigma factor
IPR014284
Domain description: RNA polymerase sigma-70-like domain
Occurring in:
  1. RNA polymerase sigma factor
IPR013325
Domain description: RNA polymerase sigma factor, region 2
Occurring in:
  1. RNA polymerase sigma factor