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The structure of Plasmodium vivax Duffy binding protein (PvDBP) bound to human antibody DB9

Source organisms:
Biochemical function: host cell surface receptor binding
Biological process: not assigned
Cellular component: membrane

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GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Sequence family

Pfam Protein family (Pfam)
PF05424
Domain description: Duffy binding domain
Occurring in:
  1. Duffy receptor
The deposited structure of PDB entry 6r2s contains 1 copy of Pfam domain PF05424 (Duffy binding domain) in Duffy receptor. Showing 1 copy in chain C.

InterPro InterPro annotations
IPR003597
Domain description: Immunoglobulin C1-set
Occurring in:
  1. Antibody DB9 light chain
  2. Antibody DB9 heavy chain
IPR013106
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. Antibody DB9 light chain
  2. Antibody DB9 heavy chain
IPR036179
Domain description: Immunoglobulin-like domain superfamily
Occurring in:
  1. Antibody DB9 light chain
  2. Antibody DB9 heavy chain
IPR007110
Domain description: Immunoglobulin-like domain
Occurring in:
  1. Antibody DB9 light chain
  2. Antibody DB9 heavy chain
IPR013783
Domain description: Immunoglobulin-like fold
Occurring in:
  1. Antibody DB9 light chain
  2. Antibody DB9 heavy chain
IPR003599
Domain description: Immunoglobulin subtype
Occurring in:
  1. Antibody DB9 light chain
  2. Antibody DB9 heavy chain
IPR003006
Domain description: Immunoglobulin/major histocompatibility complex, conserved site
Occurring in:
  1. Antibody DB9 light chain
  2. Antibody DB9 heavy chain
IPR004258
Domain description: Duffy-binding-like domain
Occurring in:
  1. Duffy receptor
IPR008602
Domain description: Duffy-antigen binding domain
Occurring in:
  1. Duffy receptor
IPR042202
Domain description: Duffy-antigen binding superfamily
Occurring in:
  1. Duffy receptor

Structure domains

CATH CATH domains
2.60.40.10
Class: Mainly Beta
Architecture: Sandwich
Topology: Immunoglobulin-like
Homology: Immunoglobulins
Occurring in:
  1. Antibody DB9 light chain
The deposited structure of PDB entry 6r2s contains 2 copies of CATH domain 2.60.40.10 (Immunoglobulin-like) in Antibody DB9 light chain. Showing 2 copies in chain A.
1.20.58.830
Class: Mainly Alpha
Architecture: Up-down Bundle
Topology: Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homology: Methane Monooxygenase Hydroxylase; Chain G, domain 1
Occurring in:
  1. Duffy receptor
The deposited structure of PDB entry 6r2s contains 1 copy of CATH domain 1.20.58.830 (Methane Monooxygenase Hydroxylase; Chain G, domain 1) in Duffy receptor. Showing 1 copy in chain C.
1.20.1310.20
Class: Mainly Alpha
Architecture: Up-down Bundle
Topology: 5 helical Cullin repeat like
Homology: Duffy-antigen binding domain
Occurring in:
  1. Duffy receptor
The deposited structure of PDB entry 6r2s contains 1 copy of CATH domain 1.20.1310.20 (5 helical Cullin repeat like) in Duffy receptor. Showing 1 copy in chain C.

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