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Head domain of the mt-SSU assemblosome from Trypanosoma brucei

Electron Microscopy
3.1Å resolution
PDB entry 6sg9 coloured by chain, front view.
PDB entry 6sg9 coloured by chain, side view.
PDB entry 6sg9 coloured by chain, top view.
Source organism: Trypanosoma brucei brucei
Assembly composition:
hetero 53-mer (preferred)
Entry contents: 52 distinct polypeptide molecules
1 distinct RNA molecule

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 53-mer
PDBe Complex ID: PDB-CPX-104892

Macromolecules

uS5m
Chain: CE
Length: 435 amino acids
Theoretical weight: 50.15 KDa
Source organism: Trypanosoma brucei brucei
InterPro: Small ribosomal subunit protein uS5, C-terminal
uS5m in PDB entry 6sg9, assembly 1, front view.
uS5m in PDB entry 6sg9, assembly 1, side view.
uS5m in PDB entry 6sg9, assembly 1, top view.
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uS11m
Chain: CK
Length: 326 amino acids
Theoretical weight: 37.95 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q389T7 (Residues: 1-326; Coverage: 100%)
Gene name: Tb10.406.0510
InterPro: Small ribosomal subunit protein uS11 superfamily
uS11m in PDB entry 6sg9, assembly 1, front view.
uS11m in PDB entry 6sg9, assembly 1, side view.
uS11m in PDB entry 6sg9, assembly 1, top view.
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mS38
Chain: Cn
Length: 250 amino acids
Theoretical weight: 28.24 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57VQ9 (Residues: 1-250; Coverage: 100%)
Gene names: Tb07.29K4.740, Tb927.7.630
mS38 in PDB entry 6sg9, assembly 1, front view.
mS38 in PDB entry 6sg9, assembly 1, side view.
mS38 in PDB entry 6sg9, assembly 1, top view.
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Ribosomal protein S24/S35 mitochondrial conserved domain-containing protein
Chain: FJ
Length: 362 amino acids
Theoretical weight: 42.51 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: D0A8R9 (Residues: 1-362; Coverage: 100%)
Gene name: TbgDal_XI11890
Ribosomal protein S24/S35 mitochondrial conserved domain-containing protein in PDB entry 6sg9, assembly 1, front view.
Ribosomal protein S24/S35 mitochondrial conserved domain-containing protein in PDB entry 6sg9, assembly 1, side view.
Ribosomal protein S24/S35 mitochondrial conserved domain-containing protein in PDB entry 6sg9, assembly 1, top view.
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mt-SAF28
Chain: FY
Length: 188 amino acids
Theoretical weight: 21.47 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: A0A3L6L5M9 (Residues: 1-188; Coverage: 100%)
Gene name: DPX39_060023800
mt-SAF28 in PDB entry 6sg9, assembly 1, front view.
mt-SAF28 in PDB entry 6sg9, assembly 1, side view.
mt-SAF28 in PDB entry 6sg9, assembly 1, top view.
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Glutaredoxin domain-containing protein
Chain: Fa
Length: 171 amino acids
Theoretical weight: 19.66 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57VU7 (Residues: 1-171; Coverage: 100%)
Gene names: Tb07.29K4.100, Tb927.7.1010
InterPro: Thioredoxin-like superfamily
Glutaredoxin domain-containing protein in PDB entry 6sg9, assembly 1, front view.
Glutaredoxin domain-containing protein in PDB entry 6sg9, assembly 1, side view.
Glutaredoxin domain-containing protein in PDB entry 6sg9, assembly 1, top view.
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uS3m
Chain: CC
Length: 74 amino acids
Theoretical weight: 9.07 KDa
Source organism: Trypanosoma brucei brucei
uS3m in PDB entry 6sg9, assembly 1, front view.
uS3m in PDB entry 6sg9, assembly 1, side view.
uS3m in PDB entry 6sg9, assembly 1, top view.
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Ribosomal protein S9
Chain: CI
Length: 443 amino acids
Theoretical weight: 50.2 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57W62 (Residues: 1-443; Coverage: 100%)
Gene names: Tb08.28F14.630, Tb927.8.3110
Pfam: Ribosomal protein S9/S16
InterPro:
Ribosomal protein S9 in PDB entry 6sg9, assembly 1, front view.
Ribosomal protein S9 in PDB entry 6sg9, assembly 1, side view.
Ribosomal protein S9 in PDB entry 6sg9, assembly 1, top view.
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uS10m
Chain: CJ
Length: 817 amino acids
Theoretical weight: 94.32 KDa
Source organism: Trypanosoma brucei brucei
InterPro: LysM domain
uS10m in PDB entry 6sg9, assembly 1, front view.
uS10m in PDB entry 6sg9, assembly 1, side view.
uS10m in PDB entry 6sg9, assembly 1, top view.
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uS14m
Chain: CN
Length: 166 amino acids
Theoretical weight: 19.9 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q580I0 (Residues: 1-166; Coverage: 100%)
Gene names: Tb08.29O9.64, Tb927.8.1430
uS14m in PDB entry 6sg9, assembly 1, front view.
uS14m in PDB entry 6sg9, assembly 1, side view.
uS14m in PDB entry 6sg9, assembly 1, top view.
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uS19m
Chain: CS
Length: 244 amino acids
Theoretical weight: 28.36 KDa
Source organism: Trypanosoma brucei brucei
uS19m in PDB entry 6sg9, assembly 1, front view.
uS19m in PDB entry 6sg9, assembly 1, side view.
uS19m in PDB entry 6sg9, assembly 1, top view.
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Small ribosomal subunit protein mS29
Chain: Cg
Length: 498 amino acids
Theoretical weight: 57.05 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q585C2 (Residues: 1-498; Coverage: 100%)
Gene names: Tb06.3A7.780, Tb927.6.1250
Pfam: Mitochondrial ribosomal death-associated protein 3
InterPro: Small ribosomal subunit protein mS29
Small ribosomal subunit protein mS29 in PDB entry 6sg9, assembly 1, front view.
Small ribosomal subunit protein mS29 in PDB entry 6sg9, assembly 1, side view.
Small ribosomal subunit protein mS29 in PDB entry 6sg9, assembly 1, top view.
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mS33
Chain: Ci
Length: 181 amino acids
Theoretical weight: 21.24 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57WW0 (Residues: 1-181; Coverage: 100%)
Gene names: Tb03.27F10.720, Tb927.3.770
mS33 in PDB entry 6sg9, assembly 1, front view.
mS33 in PDB entry 6sg9, assembly 1, side view.
mS33 in PDB entry 6sg9, assembly 1, top view.
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Mitochondrial SSU ribosomal protein
Chain: Ck
Length: 874 amino acids
Theoretical weight: 98.38 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q387C7 (Residues: 1-874; Coverage: 100%)
Gene name: Tb11.47.0024
Mitochondrial SSU ribosomal protein in PDB entry 6sg9, assembly 1, front view.
Mitochondrial SSU ribosomal protein in PDB entry 6sg9, assembly 1, side view.
Mitochondrial SSU ribosomal protein in PDB entry 6sg9, assembly 1, top view.
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mS49
Chain: DB
Length: 1181 amino acids
Theoretical weight: 137.23 KDa
Source organism: Trypanosoma brucei brucei
mS49 in PDB entry 6sg9, assembly 1, front view.
mS49 in PDB entry 6sg9, assembly 1, side view.
mS49 in PDB entry 6sg9, assembly 1, top view.
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mS50
Chain: DC
Length: 1165 amino acids
Theoretical weight: 131.72 KDa
Source organism: Trypanosoma brucei brucei
mS50 in PDB entry 6sg9, assembly 1, front view.
mS50 in PDB entry 6sg9, assembly 1, side view.
mS50 in PDB entry 6sg9, assembly 1, top view.
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Mitochondrial SSU ribosomal protein
Chain: DE
Length: 747 amino acids
Theoretical weight: 85 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q386Q7 (Residues: 1-747; Coverage: 100%)
Gene name: Tb11.02.0130
Mitochondrial SSU ribosomal protein in PDB entry 6sg9, assembly 1, front view.
Mitochondrial SSU ribosomal protein in PDB entry 6sg9, assembly 1, side view.
Mitochondrial SSU ribosomal protein in PDB entry 6sg9, assembly 1, top view.
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mS53
Chain: DF
Length: 666 amino acids
Theoretical weight: 75.31 KDa
Source organism: Trypanosoma brucei brucei
mS53 in PDB entry 6sg9, assembly 1, front view.
mS53 in PDB entry 6sg9, assembly 1, side view.
mS53 in PDB entry 6sg9, assembly 1, top view.
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mS54
Chain: DG
Length: 631 amino acids
Theoretical weight: 72.05 KDa
Source organism: Trypanosoma brucei brucei
InterPro: Tetratricopeptide-like helical domain superfamily
mS54 in PDB entry 6sg9, assembly 1, front view.
mS54 in PDB entry 6sg9, assembly 1, side view.
mS54 in PDB entry 6sg9, assembly 1, top view.
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mS55 (KRIPP8)
Chain: DH
Length: 581 amino acids
Theoretical weight: 66.68 KDa
Source organism: Trypanosoma brucei brucei
InterPro: Tetratricopeptide-like helical domain superfamily
mS55 (KRIPP8) in PDB entry 6sg9, assembly 1, front view.
mS55 (KRIPP8) in PDB entry 6sg9, assembly 1, side view.
mS55 (KRIPP8) in PDB entry 6sg9, assembly 1, top view.
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mS57
Chain: DJ
Length: 396 amino acids
Theoretical weight: 45.96 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q584U8 (Residues: 1-396; Coverage: 100%)
Gene names: Tb06.4M18.330, Tb927.6.2080
mS57 in PDB entry 6sg9, assembly 1, front view.
mS57 in PDB entry 6sg9, assembly 1, side view.
mS57 in PDB entry 6sg9, assembly 1, top view.
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mS58
Chain: DK
Length: 324 amino acids
Theoretical weight: 35.62 KDa
Source organism: Trypanosoma brucei brucei
mS58 in PDB entry 6sg9, assembly 1, front view.
mS58 in PDB entry 6sg9, assembly 1, side view.
mS58 in PDB entry 6sg9, assembly 1, top view.
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Rhodanese domain-containing protein
Chain: DT
Length: 247 amino acids
Theoretical weight: 30.1 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q586G5 (Residues: 1-247; Coverage: 100%)
Gene names: Tb06.30P15.560, Tb927.6.4930
Pfam: Rhodanese-like domain
InterPro:
Rhodanese domain-containing protein in PDB entry 6sg9, assembly 1, front view.
Rhodanese domain-containing protein in PDB entry 6sg9, assembly 1, side view.
Rhodanese domain-containing protein in PDB entry 6sg9, assembly 1, top view.
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mS69
Chain: DV
Length: 183 amino acids
Theoretical weight: 21.59 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57UZ6 (Residues: 1-183; Coverage: 100%)
Gene names: Tb08.4A8.150, Tb927.8.4550
mS69 in PDB entry 6sg9, assembly 1, front view.
mS69 in PDB entry 6sg9, assembly 1, side view.
mS69 in PDB entry 6sg9, assembly 1, top view.
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mS70
Chain: DW
Length: 179 amino acids
Theoretical weight: 21.25 KDa
Source organism: Trypanosoma brucei brucei
mS70 in PDB entry 6sg9, assembly 1, front view.
mS70 in PDB entry 6sg9, assembly 1, side view.
mS70 in PDB entry 6sg9, assembly 1, top view.
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mS71
Chain: DX
Length: 169 amino acids
Theoretical weight: 20.09 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q383G5 (Residues: 1-169; Coverage: 100%)
Gene name: Tb11.01.2920
mS71 in PDB entry 6sg9, assembly 1, front view.
mS71 in PDB entry 6sg9, assembly 1, side view.
mS71 in PDB entry 6sg9, assembly 1, top view.
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mS72
Chain: DY
Length: 163 amino acids
Theoretical weight: 19.34 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57YD4 (Residues: 1-163; Coverage: 100%)
Gene names: Tb07.13M20.50, Tb927.7.3240
mS72 in PDB entry 6sg9, assembly 1, front view.
mS72 in PDB entry 6sg9, assembly 1, side view.
mS72 in PDB entry 6sg9, assembly 1, top view.
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Methyltransferase
Chain: F1
Length: 1041 amino acids
Theoretical weight: 119.8 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q385R2 (Residues: 1-1041; Coverage: 100%)
Gene name: Tb11.02.2710
Pfam: Mitochondrial small ribosomal subunit Rsm22
InterPro:
Methyltransferase in PDB entry 6sg9, assembly 1, front view.
Methyltransferase in PDB entry 6sg9, assembly 1, side view.
Methyltransferase in PDB entry 6sg9, assembly 1, top view.
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mt-SAF4
Chain: F4
Length: 811 amino acids
Theoretical weight: 91.55 KDa
Source organism: Trypanosoma brucei brucei
InterPro: S-adenosyl-L-methionine-dependent methyltransferase superfamily
mt-SAF4 in PDB entry 6sg9, assembly 1, front view.
mt-SAF4 in PDB entry 6sg9, assembly 1, side view.
mt-SAF4 in PDB entry 6sg9, assembly 1, top view.
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mt-SAF12 (KRIPP18)
Chain: FD
Length: 579 amino acids
Theoretical weight: 65.05 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q583U2 (Residues: 1-579; Coverage: 100%)
Gene names: Tb06.3D8.320, Tb927.6.610
mt-SAF12 (KRIPP18) in PDB entry 6sg9, assembly 1, front view.
mt-SAF12 (KRIPP18) in PDB entry 6sg9, assembly 1, side view.
mt-SAF12 (KRIPP18) in PDB entry 6sg9, assembly 1, top view.
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S-adenosyl-methyltransferase mraW-like protein, putative
Chain: FF
Length: 474 amino acids
Theoretical weight: 53.32 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57W60 (Residues: 1-474; Coverage: 100%)
Gene names: Tb08.28F14.650, Tb927.8.3130
Pfam: MraW methylase family
InterPro:
S-adenosyl-methyltransferase mraW-like protein, putative in PDB entry 6sg9, assembly 1, front view.
S-adenosyl-methyltransferase mraW-like protein, putative in PDB entry 6sg9, assembly 1, side view.
S-adenosyl-methyltransferase mraW-like protein, putative in PDB entry 6sg9, assembly 1, top view.
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mt-SAF15
Chain: FG
Length: 463 amino acids
Theoretical weight: 53.27 KDa
Source organism: Trypanosoma brucei brucei
mt-SAF15 in PDB entry 6sg9, assembly 1, front view.
mt-SAF15 in PDB entry 6sg9, assembly 1, side view.
mt-SAF15 in PDB entry 6sg9, assembly 1, top view.
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mt-SAF16
Chain: FH
Length: 457 amino acids
Theoretical weight: 50.91 KDa
Source organism: Trypanosoma brucei brucei
InterPro:
mt-SAF16 in PDB entry 6sg9, assembly 1, front view.
mt-SAF16 in PDB entry 6sg9, assembly 1, side view.
mt-SAF16 in PDB entry 6sg9, assembly 1, top view.
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mt-SAF17
Chain: FI
Length: 445 amino acids
Theoretical weight: 50.15 KDa
Source organism: Trypanosoma brucei brucei
mt-SAF17 in PDB entry 6sg9, assembly 1, front view.
mt-SAF17 in PDB entry 6sg9, assembly 1, side view.
mt-SAF17 in PDB entry 6sg9, assembly 1, top view.
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Mitochondrial glycoprotein-like protein
Chain: FK
Length: 372 amino acids
Theoretical weight: 41.24 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57XS8 (Residues: 1-372; Coverage: 100%)
Gene names: Tb07.21H15.310, Tb927.7.7080
Pfam: Mitochondrial glycoprotein
InterPro:
Mitochondrial glycoprotein-like protein in PDB entry 6sg9, assembly 1, front view.
Mitochondrial glycoprotein-like protein in PDB entry 6sg9, assembly 1, side view.
Mitochondrial glycoprotein-like protein in PDB entry 6sg9, assembly 1, top view.
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mt-SAF20
Chain: FL
Length: 353 amino acids
Theoretical weight: 40.29 KDa
Source organism: Trypanosoma brucei brucei
InterPro:
mt-SAF20 in PDB entry 6sg9, assembly 1, front view.
mt-SAF20 in PDB entry 6sg9, assembly 1, side view.
mt-SAF20 in PDB entry 6sg9, assembly 1, top view.
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mt-SAF25
Chain: FV
Length: 264 amino acids
Theoretical weight: 29.47 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q38C60 (Residues: 37-300; Coverage: 88%)
Gene name: Tb10.70.6030
InterPro:
mt-SAF25 in PDB entry 6sg9, assembly 1, front view.
mt-SAF25 in PDB entry 6sg9, assembly 1, side view.
mt-SAF25 in PDB entry 6sg9, assembly 1, top view.
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mt-SAF34
Chain: Fe
Length: 123 amino acids
Theoretical weight: 14.86 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q387L0 (Residues: 1-123; Coverage: 100%)
Gene name: Tb11.03.0725
mt-SAF34 in PDB entry 6sg9, assembly 1, front view.
mt-SAF34 in PDB entry 6sg9, assembly 1, side view.
mt-SAF34 in PDB entry 6sg9, assembly 1, top view.
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UNK-a
Chain: Ua
Length: 70 amino acids
Theoretical weight: 5.98 KDa
Source organism: Trypanosoma brucei brucei
UNK-a in PDB entry 6sg9, assembly 1, front view.
UNK-a in PDB entry 6sg9, assembly 1, side view.
UNK-a in PDB entry 6sg9, assembly 1, top view.
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UNK-b
Chain: Ub
Length: 42 amino acids
Theoretical weight: 3.59 KDa
Source organism: Trypanosoma brucei brucei
UNK-b in PDB entry 6sg9, assembly 1, front view.
UNK-b in PDB entry 6sg9, assembly 1, side view.
UNK-b in PDB entry 6sg9, assembly 1, top view.
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UNK-c
Chain: Uc
Length: 12 amino acids
Theoretical weight: 1.04 KDa
Source organism: Trypanosoma brucei brucei
UNK-c in PDB entry 6sg9, assembly 1, front view.
UNK-c in PDB entry 6sg9, assembly 1, side view.
UNK-c in PDB entry 6sg9, assembly 1, top view.
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UNK-d
Chain: Ud
Length: 59 amino acids
Theoretical weight: 5.04 KDa
Source organism: Trypanosoma brucei brucei
UNK-d in PDB entry 6sg9, assembly 1, front view.
UNK-d in PDB entry 6sg9, assembly 1, side view.
UNK-d in PDB entry 6sg9, assembly 1, top view.
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UNK-e
Chain: Ue
Length: 29 amino acids
Theoretical weight: 2.49 KDa
Source organism: Trypanosoma brucei brucei
UNK-e in PDB entry 6sg9, assembly 1, front view.
UNK-e in PDB entry 6sg9, assembly 1, side view.
UNK-e in PDB entry 6sg9, assembly 1, top view.
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UNK-f
Chain: Uf
Length: 9 amino acids
Theoretical weight: 784 Da
Source organism: Trypanosoma brucei brucei
UNK-f in PDB entry 6sg9, assembly 1, front view.
UNK-f in PDB entry 6sg9, assembly 1, side view.
UNK-f in PDB entry 6sg9, assembly 1, top view.
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UNK-g
Chain: Ug
Length: 167 amino acids
Theoretical weight: 14.23 KDa
Source organism: Trypanosoma brucei brucei
UNK-g in PDB entry 6sg9, assembly 1, front view.
UNK-g in PDB entry 6sg9, assembly 1, side view.
UNK-g in PDB entry 6sg9, assembly 1, top view.
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UNK-h
Chain: Uh
Length: 255 amino acids
Theoretical weight: 21.72 KDa
Source organism: Trypanosoma brucei brucei
UNK-h in PDB entry 6sg9, assembly 1, front view.
UNK-h in PDB entry 6sg9, assembly 1, side view.
UNK-h in PDB entry 6sg9, assembly 1, top view.
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UNK-i
Chain: Ui
Length: 32 amino acids
Theoretical weight: 2.74 KDa
Source organism: Trypanosoma brucei brucei
UNK-i in PDB entry 6sg9, assembly 1, front view.
UNK-i in PDB entry 6sg9, assembly 1, side view.
UNK-i in PDB entry 6sg9, assembly 1, top view.
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UNK-j
Chain: Uj
Length: 19 amino acids
Theoretical weight: 1.64 KDa
Source organism: Trypanosoma brucei brucei
UNK-j in PDB entry 6sg9, assembly 1, front view.
UNK-j in PDB entry 6sg9, assembly 1, side view.
UNK-j in PDB entry 6sg9, assembly 1, top view.
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UNK-k
Chain: Uk
Length: 27 amino acids
Theoretical weight: 2.32 KDa
Source organism: Trypanosoma brucei brucei
UNK-k in PDB entry 6sg9, assembly 1, front view.
UNK-k in PDB entry 6sg9, assembly 1, side view.
UNK-k in PDB entry 6sg9, assembly 1, top view.
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UNK-l
Chain: Ul
Length: 14 amino acids
Theoretical weight: 1.21 KDa
Source organism: Trypanosoma brucei brucei
UNK-l in PDB entry 6sg9, assembly 1, front view.
UNK-l in PDB entry 6sg9, assembly 1, side view.
UNK-l in PDB entry 6sg9, assembly 1, top view.
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UNK-m
Chain: Um
Length: 11 amino acids
Theoretical weight: 954 Da
Source organism: Trypanosoma brucei brucei
UNK-m in PDB entry 6sg9, assembly 1, front view.
UNK-m in PDB entry 6sg9, assembly 1, side view.
UNK-m in PDB entry 6sg9, assembly 1, top view.
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UNK-x
Chain: Ux
Length: 108 amino acids
Theoretical weight: 9.21 KDa
Source organism: Trypanosoma brucei brucei
UNK-x in PDB entry 6sg9, assembly 1, front view.
UNK-x in PDB entry 6sg9, assembly 1, side view.
UNK-x in PDB entry 6sg9, assembly 1, top view.
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RNA chain CA
Name: 9S rRNA
Representative chains: CA
Length: 802 nucleotides
Theoretical weight: 256.38 KDa
Rfam: Trypanosomatid mitochondrial small subunit ribosomal RNA
9S rRNA in PDB entry 6sg9, assembly 1, front view.
9S rRNA in PDB entry 6sg9, assembly 1, side view.
9S rRNA in PDB entry 6sg9, assembly 1, top view.
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