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Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Electron Microscopy
2.7Å resolution
PDB entry 6tc3 coloured by chain, front view.
PDB entry 6tc3 coloured by chain, side view.
PDB entry 6tc3 coloured by chain, top view.
Source organism: Escherichia coli K-12
Assembly composition:
hetero 55-mer (preferred)
Entry contents: 50 distinct polypeptide molecules
5 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 55-mer
PDBe Complex ID: PDB-CPX-135684

Macromolecules

Small ribosomal subunit protein uS2
Chain: S021
Length: 241 amino acids
Theoretical weight: 26.78 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7V0 (Residues: 1-241; Coverage: 100%)
Gene names: JW0164, b0169, rpsB
Pfam: Ribosomal protein S2
InterPro:
Small ribosomal subunit protein uS2 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS2 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS2 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS3
Chain: S031
Length: 233 amino acids
Theoretical weight: 26.03 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7V3 (Residues: 1-233; Coverage: 100%)
Gene names: JW3276, b3314, rpsC
Pfam:
InterPro:
Small ribosomal subunit protein uS3 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS3 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS3 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS4
Chain: S041
Length: 206 amino acids
Theoretical weight: 23.51 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7V8 (Residues: 1-206; Coverage: 100%)
Gene names: JW3258, b3296, ramA, rpsD
Pfam:
InterPro:
Small ribosomal subunit protein uS4 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS4 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS4 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS5
Chain: S051
Length: 167 amino acids
Theoretical weight: 17.63 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7W1 (Residues: 1-167; Coverage: 100%)
Gene names: JW3265, b3303, rpsE, spc
Pfam:
InterPro:
Small ribosomal subunit protein uS5 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein bS6
Chain: S061
Length: 135 amino acids
Theoretical weight: 15.73 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P02358 (Residues: 1-135; Coverage: 100%)
Gene names: JW4158, b4200, rpsF
Pfam: Ribosomal protein S6
InterPro:
Small ribosomal subunit protein bS6 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein bS6 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein bS6 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS7
Chain: S071
Length: 179 amino acids
Theoretical weight: 20.06 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P02359 (Residues: 1-179; Coverage: 100%)
Gene names: JW3303, b3341, rpsG
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS7 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS7 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS8
Chain: S081
Length: 130 amino acids
Theoretical weight: 14.15 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7W7 (Residues: 1-130; Coverage: 100%)
Gene names: JW3268, b3306, rpsH
Pfam: Ribosomal protein S8
InterPro:
Small ribosomal subunit protein uS8 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS8 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS8 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS9
Chain: S091
Length: 130 amino acids
Theoretical weight: 14.89 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7X3 (Residues: 1-130; Coverage: 100%)
Gene names: JW3199, b3230, rpsI
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS9 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS9 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS10
Chain: S101
Length: 103 amino acids
Theoretical weight: 11.76 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7R5 (Residues: 1-103; Coverage: 100%)
Gene names: JW3283, b3321, nusE, rpsJ
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS10 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS10 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS11
Chain: S111
Length: 129 amino acids
Theoretical weight: 13.87 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7R9 (Residues: 1-129; Coverage: 100%)
Gene names: JW3259, b3297, rpsK
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS11 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS11 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS12
Chain: S121
Length: 124 amino acids
Theoretical weight: 13.81 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7S3 (Residues: 1-124; Coverage: 100%)
Gene names: JW3304, b3342, rpsL, strA
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS12 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS12 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS13
Chain: S131
Length: 118 amino acids
Theoretical weight: 13.13 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7S9 (Residues: 1-118; Coverage: 100%)
Gene names: JW3260, b3298, rpsM
Pfam: Ribosomal protein S13/S18
InterPro:
Small ribosomal subunit protein uS13 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS13 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS13 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS14
Chain: S141
Length: 102 amino acids
Theoretical weight: 11.68 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0AG59 (Residues: 1-35, 36-101; Coverage: 100%)
Gene names: JW3269, b3307, rpsN
Pfam: Ribosomal protein S14p/S29e
InterPro:
Small ribosomal subunit protein uS14 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS14 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS14 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS15
Chain: S151
Length: 89 amino acids
Theoretical weight: 10.29 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0ADZ4 (Residues: 1-89; Coverage: 100%)
Gene names: JW3134, b3165, rpsO, secC
Pfam: Ribosomal protein S15
InterPro:
Small ribosomal subunit protein uS15 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS15 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS15 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein bS16
Chain: S161
Length: 82 amino acids
Theoretical weight: 9.21 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7T3 (Residues: 1-82; Coverage: 100%)
Gene names: JW2590, b2609, rpsP
Pfam: Ribosomal protein S16
InterPro:
Small ribosomal subunit protein bS16 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein bS16 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein bS16 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS17
Chain: S171
Length: 84 amino acids
Theoretical weight: 9.72 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0AG63 (Residues: 1-84; Coverage: 100%)
Gene names: JW3273, b3311, neaA, rpsQ
Pfam: Ribosomal protein S17
InterPro:
Small ribosomal subunit protein uS17 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS17 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS17 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein bS18
Chain: S181
Length: 75 amino acids
Theoretical weight: 9.01 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7T7 (Residues: 1-75; Coverage: 100%)
Gene names: JW4160, b4202, rpsR
Pfam: Ribosomal protein S18
InterPro:
Small ribosomal subunit protein bS18 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein bS18 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein bS18 in PDB entry 6tc3, assembly 1, top view.
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Small ribosomal subunit protein uS19
Chain: S191
Length: 92 amino acids
Theoretical weight: 10.46 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7U3 (Residues: 1-92; Coverage: 100%)
Gene names: JW3278, b3316, rpsS
Pfam: Ribosomal protein S19
InterPro:
Small ribosomal subunit protein uS19 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein uS19 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein uS19 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS20
Chain: S201
Length: 87 amino acids
Theoretical weight: 9.71 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7U7 (Residues: 1-87; Coverage: 100%)
Gene names: JW0022, b0023, rpsT
Pfam: Ribosomal protein S20
InterPro:
Small ribosomal subunit protein bS20 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein bS20 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein bS20 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS21
Chain: S211
Length: 71 amino acids
Theoretical weight: 8.52 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P68679 (Residues: 1-71; Coverage: 100%)
Gene names: JW3037, b3065, rpsU
Pfam: Ribosomal protein S21
InterPro:
Small ribosomal subunit protein bS21 in PDB entry 6tc3, assembly 1, front view.
Small ribosomal subunit protein bS21 in PDB entry 6tc3, assembly 1, side view.
Small ribosomal subunit protein bS21 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL2
Chain: L021
Length: 273 amino acids
Theoretical weight: 29.92 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P60422 (Residues: 1-273; Coverage: 100%)
Gene names: JW3279, b3317, rplB
Pfam:
InterPro:
Large ribosomal subunit protein uL2 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL2 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL2 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL3
Chain: L031
Length: 209 amino acids
Theoretical weight: 22.29 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P60438 (Residues: 1-209; Coverage: 100%)
Gene names: JW3282, b3320, rplC
Pfam: Ribosomal protein L3
InterPro:
Large ribosomal subunit protein uL3 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL3 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL3 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL4
Chain: L041
Length: 201 amino acids
Theoretical weight: 22.12 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P60723 (Residues: 1-201; Coverage: 100%)
Gene names: JW3281, b3319, eryA, rplD
Pfam: Ribosomal protein L4/L1 family
InterPro:
Large ribosomal subunit protein uL4 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL4 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL4 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL5
Chain: L051
Length: 179 amino acids
Theoretical weight: 20.33 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P62399 (Residues: 1-179; Coverage: 100%)
Gene names: JW3270, b3308, rplE
Pfam:
InterPro:
Large ribosomal subunit protein uL5 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL5 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL5 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL6
Chain: L061
Length: 177 amino acids
Theoretical weight: 18.93 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0AG55 (Residues: 1-177; Coverage: 100%)
Gene names: JW3267, b3305, rplF
Pfam: Ribosomal protein L6
InterPro:
Large ribosomal subunit protein uL6 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL6 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL6 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL9
Chain: L091
Length: 149 amino acids
Theoretical weight: 15.79 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7R1 (Residues: 1-149; Coverage: 100%)
Gene names: JW4161, b4203, rplI
Pfam:
InterPro:
Large ribosomal subunit protein bL9 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL9 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL9 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL31
Chain: L311
Length: 70 amino acids
Theoretical weight: 7.89 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7M9 (Residues: 1-70; Coverage: 100%)
Gene names: JW3907, b3936, rpmE
Pfam: Ribosomal protein L31
InterPro:
Large ribosomal subunit protein bL31 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL31 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL31 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL13
Chain: L131
Length: 142 amino acids
Theoretical weight: 16.05 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0AA10 (Residues: 1-142; Coverage: 100%)
Gene names: JW3200, b3231, rplM
Pfam: Ribosomal protein L13
InterPro:
Large ribosomal subunit protein uL13 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL13 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL13 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL14
Chain: L141
Length: 123 amino acids
Theoretical weight: 13.57 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0ADY3 (Residues: 1-123; Coverage: 100%)
Gene names: JW3272, b3310, rplN
Pfam: Ribosomal protein L14p/L23e
InterPro:
Large ribosomal subunit protein uL14 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL14 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL14 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL15
Chain: L151
Length: 144 amino acids
Theoretical weight: 15.01 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P02413 (Residues: 1-144; Coverage: 100%)
Gene names: JW3263, b3301, rplO
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Large ribosomal subunit protein uL15 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL15 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL15 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL16
Chain: L161
Length: 136 amino acids
Theoretical weight: 15.33 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0ADY7 (Residues: 1-136; Coverage: 100%)
Gene names: JW3275, b3313, rplP
Pfam: Ribosomal protein L16p/L10e
InterPro:
Large ribosomal subunit protein uL16 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL16 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL16 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL17
Chain: L171
Length: 127 amino acids
Theoretical weight: 14.39 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0AG44 (Residues: 1-127; Coverage: 100%)
Gene names: JW3256, b3294, rplQ
Pfam: Ribosomal protein L17
InterPro:
Large ribosomal subunit protein bL17 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL17 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL17 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL18
Chain: L181
Length: 117 amino acids
Theoretical weight: 12.79 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0C018 (Residues: 1-117; Coverage: 100%)
Gene names: JW3266, b3304, rplR
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
Large ribosomal subunit protein uL18 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL18 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL18 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL19
Chain: L191
Length: 115 amino acids
Theoretical weight: 13.16 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7K6 (Residues: 1-115; Coverage: 100%)
Gene names: JW2587, b2606, rplS
Pfam: Ribosomal protein L19
InterPro:
Large ribosomal subunit protein bL19 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL19 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL19 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL20
Chain: L201
Length: 118 amino acids
Theoretical weight: 13.53 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7L3 (Residues: 1-118; Coverage: 100%)
Gene names: JW1706, b1716, pdzA, rplT
Pfam: Ribosomal protein L20
InterPro:
Large ribosomal subunit protein bL20 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL20 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL20 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL21
Chain: L211
Length: 103 amino acids
Theoretical weight: 11.59 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0AG48 (Residues: 1-103; Coverage: 100%)
Gene names: JW3153, b3186, rplU
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
Large ribosomal subunit protein bL21 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL21 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL21 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL22
Chain: L221
Length: 110 amino acids
Theoretical weight: 12.25 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P61175 (Residues: 1-110; Coverage: 100%)
Gene names: JW3277, b3315, eryB, rplV
Pfam: Ribosomal protein L22p/L17e
InterPro:
Large ribosomal subunit protein uL22 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL22 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL22 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL23
Chain: L231
Length: 100 amino acids
Theoretical weight: 11.22 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0ADZ0 (Residues: 1-100; Coverage: 100%)
Gene names: JW3280, b3318, rplW
Pfam: Ribosomal protein L23
InterPro:
Large ribosomal subunit protein uL23 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL23 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL23 in PDB entry 6tc3, assembly 1, top view.
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Large ribosomal subunit protein uL24
Chain: L241
Length: 104 amino acids
Theoretical weight: 11.34 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P60624 (Residues: 1-104; Coverage: 100%)
Gene names: JW3271, b3309, rplX
Pfam:
InterPro:
Large ribosomal subunit protein uL24 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL24 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL24 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL25
Chain: L251
Length: 94 amino acids
Theoretical weight: 10.71 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P68919 (Residues: 1-94; Coverage: 100%)
Gene names: JW2173, b2185, rplY
Pfam: Ribosomal L25p family
InterPro:
Large ribosomal subunit protein bL25 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL25 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL25 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL27
Chain: L271
Length: 85 amino acids
Theoretical weight: 9.15 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7L8 (Residues: 1-85; Coverage: 100%)
Gene names: JW3152, b3185, rpmA
Pfam: Ribosomal L27 protein
InterPro:
Large ribosomal subunit protein bL27 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL27 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL27 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL28
Chain: L281
Length: 78 amino acids
Theoretical weight: 9.03 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7M2 (Residues: 1-78; Coverage: 100%)
Gene names: JW3612, b3637, rpmB
Pfam: Ribosomal L28 family
InterPro:
Large ribosomal subunit protein bL28 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL28 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL28 in PDB entry 6tc3, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL29
Chain: L291
Length: 63 amino acids
Theoretical weight: 7.29 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7M6 (Residues: 1-63; Coverage: 100%)
Gene names: JW3274, b3312, rpmC
Pfam: Ribosomal L29 protein
InterPro:
Large ribosomal subunit protein uL29 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL29 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL29 in PDB entry 6tc3, assembly 1, top view.
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Large ribosomal subunit protein uL30
Chain: L301
Length: 59 amino acids
Theoretical weight: 6.55 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0AG51 (Residues: 1-59; Coverage: 100%)
Gene names: JW3264, b3302, rpmD
Pfam: Ribosomal protein L30p/L7e
InterPro:
Large ribosomal subunit protein uL30 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein uL30 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein uL30 in PDB entry 6tc3, assembly 1, top view.
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Large ribosomal subunit protein bL32
Chain: L321
Length: 57 amino acids
Theoretical weight: 6.46 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7N4 (Residues: 1-57; Coverage: 100%)
Gene names: JW1075, b1089, rpmF
Pfam: Ribosomal L32p protein family
InterPro:
Large ribosomal subunit protein bL32 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL32 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL32 in PDB entry 6tc3, assembly 1, top view.
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Large ribosomal subunit protein bL33
Chain: L331
Length: 55 amino acids
Theoretical weight: 6.39 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7N9 (Residues: 1-55; Coverage: 100%)
Gene names: JW3611, b3636, rpmG
Pfam: Ribosomal protein L33
InterPro:
Large ribosomal subunit protein bL33 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL33 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL33 in PDB entry 6tc3, assembly 1, top view.
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Large ribosomal subunit protein bL34
Chain: L341
Length: 46 amino acids
Theoretical weight: 5.4 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7P5 (Residues: 1-46; Coverage: 100%)
Gene names: JW3680, b3703, rimA, rpmH, ssaF
Pfam: Ribosomal protein L34
InterPro:
Large ribosomal subunit protein bL34 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL34 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL34 in PDB entry 6tc3, assembly 1, top view.
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Large ribosomal subunit protein bL35
Chain: L351
Length: 65 amino acids
Theoretical weight: 7.31 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7Q1 (Residues: 1-65; Coverage: 100%)
Gene names: JW1707, b1717, rpmI
Pfam: Ribosomal protein L35
InterPro:
Large ribosomal subunit protein bL35 in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL35 in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL35 in PDB entry 6tc3, assembly 1, top view.
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Large ribosomal subunit protein bL36A
Chain: L361
Length: 38 amino acids
Theoretical weight: 4.38 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7Q6 (Residues: 1-38; Coverage: 100%)
Gene names: JW3261, b3299, rpmJ
Pfam: Ribosomal protein L36
InterPro:
Large ribosomal subunit protein bL36A in PDB entry 6tc3, assembly 1, front view.
Large ribosomal subunit protein bL36A in PDB entry 6tc3, assembly 1, side view.
Large ribosomal subunit protein bL36A in PDB entry 6tc3, assembly 1, top view.
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Leader peptide SpeFL
Chain: SPE1
Length: 34 amino acids
Theoretical weight: 4.29 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0DTV7 (Residues: 1-34; Coverage: 100%)
Gene names: b4803, speFL
InterPro: Leader peptide SpeFL
Leader peptide SpeFL in PDB entry 6tc3, assembly 1, front view.
Leader peptide SpeFL in PDB entry 6tc3, assembly 1, side view.
Leader peptide SpeFL in PDB entry 6tc3, assembly 1, top view.
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RNA chain 16S1
Name: 16S ribosomal RNA
Representative chains: 16S1
Length: 1534 nucleotides
Theoretical weight: 497.4 KDa
Rfam: Bacterial small subunit ribosomal RNA
16S ribosomal RNA in PDB entry 6tc3, assembly 1, front view.
16S ribosomal RNA in PDB entry 6tc3, assembly 1, side view.
16S ribosomal RNA in PDB entry 6tc3, assembly 1, top view.
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RNA chain 23S1
Name: 23S ribosomal RNA
Representative chains: 23S1
Length: 2897 nucleotides
Theoretical weight: 939.61 KDa
Rfam: Bacterial large subunit ribosomal RNA
23S ribosomal RNA in PDB entry 6tc3, assembly 1, front view.
23S ribosomal RNA in PDB entry 6tc3, assembly 1, side view.
23S ribosomal RNA in PDB entry 6tc3, assembly 1, top view.
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RNA chain 05S1
Name: 5S ribosomal RNA
Representative chains: 05S1
Length: 120 nucleotides
Theoretical weight: 38.79 KDa
Rfam: 5S ribosomal RNA
5S ribosomal RNA in PDB entry 6tc3, assembly 1, front view.
5S ribosomal RNA in PDB entry 6tc3, assembly 1, side view.
5S ribosomal RNA in PDB entry 6tc3, assembly 1, top view.
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RNA chain MRN1
Name: Messenger RNA
Representative chains: MRN1
Length: 7 nucleotides
Theoretical weight: 2.17 KDa
Messenger RNA in PDB entry 6tc3, assembly 1, front view.
Messenger RNA in PDB entry 6tc3, assembly 1, side view.
Messenger RNA in PDB entry 6tc3, assembly 1, top view.
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RNA chain PTR1
Name: P-site Arg-tRNA
Representative chains: PTR1
Length: 76 nucleotides
Theoretical weight: 24.58 KDa
Rfam: tRNA
P-site Arg-tRNA in PDB entry 6tc3, assembly 1, front view.
P-site Arg-tRNA in PDB entry 6tc3, assembly 1, side view.
P-site Arg-tRNA in PDB entry 6tc3, assembly 1, top view.
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