› 6v3e

Electron Microscopy
4.4Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero icosamer (preferred)
PDBe Complex ID:
PDB-CPX-244666 (preferred)
Entry contents:
19 distinct polypeptide molecules
1 distinct RNA molecule
Macromolecules (20 distinct):
Small ribosomal subunit protein uS2 Chain: b
Molecule details ›
Chain: b
Length: 250 amino acids
Theoretical weight: 27.68 KDa
Source organism: Acinetobacter baumannii
UniProt:
  • Canonical: V5VBC2 (Residues: 1-250; Coverage: 100%)
Gene names: A7M90_04810, ABR2091_2511, ABUW_1235, APD17_10225, AUO97_00545, B9W25_05725, B9X95_11710, CBE85_00460, CV954_005970, DOL94_04645, EA706_00950, EA722_08625, EJ507_19905, F2P40_02015, F4T85_00580, FJU42_15265, G3N53_09920, GNY86_13625, GSE42_14090, IAG11_02475, IMO23_12420, ITE13_14320, JHZ39_000921, LV35_03406, MKP18_000954, P9867_17040, SAMEA104305318_02019, SAMEA4394745_01929, rpsB
Sequence domains: Ribosomal protein S2
Small ribosomal subunit protein uS3 Chain: c
Molecule details ›
Chain: c
Length: 250 amino acids
Theoretical weight: 27.97 KDa
Source organism: Acinetobacter baumannii
UniProt:
  • Canonical: V5V9N0 (Residues: 1-250; Coverage: 100%)
Gene names: A7M90_14915, ABR2091_3270, ABUW_0412, APD17_09550, AUO97_04375, B9W25_03435, B9X95_19970, CBE85_05920, CV954_002220, DOL94_03730, EA706_02770, EA722_02260, EJ507_03190, F2P40_01515, F4T85_12690, FJU42_03455, G3N53_17775, GNY86_00800, GSE42_17945, IAG11_07125, IMO23_15980, ITE13_06030, JHZ39_001290, LV35_03471, MKP18_001993, SAMEA104305318_02210, SAMEA4394745_00245, rpsC
Sequence domains:
Small ribosomal subunit protein uS4 Chain: d
Molecule details ›
Chain: d
Length: 208 amino acids
Theoretical weight: 23.31 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA15 (Residues: 1-208; Coverage: 100%)
Gene names: AB57_3506, rpsD
Sequence domains:
Small ribosomal subunit protein uS5 Chain: e
Molecule details ›
Chain: e
Length: 165 amino acids
Theoretical weight: 17.18 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA22 (Residues: 1-165; Coverage: 100%)
Gene names: AB57_3513, rpsE
Sequence domains:
Small ribosomal subunit protein bS6 Chain: f
Molecule details ›
Chain: f
Length: 127 amino acids
Theoretical weight: 14.99 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IBC1 (Residues: 1-127; Coverage: 100%)
Gene names: AB57_2509, rpsF
Sequence domains: Ribosomal protein S6
Small ribosomal subunit protein uS7 Chain: g
Molecule details ›
Chain: g
Length: 156 amino acids
Theoretical weight: 17.73 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I7S0 (Residues: 1-156; Coverage: 100%)
Gene names: AB57_0912, rpsG
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein uS8 Chain: h
Molecule details ›
Chain: h
Length: 131 amino acids
Theoretical weight: 14.25 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA25 (Residues: 1-131; Coverage: 100%)
Gene names: AB57_3516, rpsH
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein uS9 Chain: i
Molecule details ›
Chain: i
Length: 128 amino acids
Theoretical weight: 14.29 KDa
Source organism: Acinetobacter baumannii
UniProt:
  • Canonical: V5VBA5 (Residues: 1-128; Coverage: 100%)
Gene names: A7M90_18075, ABR2091_3190, ABUW_0493, APD17_00075, AUO97_03980, B9W25_16350, B9X95_20200, CBE85_18930, CV954_019000, DOL94_17890, EA686_21355, EA706_14375, EA722_14435, EJ507_18095, F2P40_19085, F4T85_18570, FJU42_18715, G3N53_18265, GNY86_08815, GSE42_17575, IAG11_16000, IMO23_15560, ITE13_18750, JHZ39_003293, LV35_03881, MKP18_003729, MKP18_003749, P9867_16165, SAMEA104305318_03848, SAMEA4394745_03633, rpsI
Sequence domains: Ribosomal protein S9/S16
30S ribosomal protein S10 Chain: j
Molecule details ›
Chain: j
Length: 103 amino acids
Theoretical weight: 11.72 KDa
Source organism: Acinetobacter sp. ANC 5600
Small ribosomal subunit protein uS11 Chain: k
Molecule details ›
Chain: k
Length: 128 amino acids
Theoretical weight: 13.56 KDa
Source organism: Acinetobacter sp. 263903-1
UniProt:
  • Canonical: A0A062C259 (Residues: 1-128; Coverage: 100%)
Gene names: J577_0021, rpsK
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein uS12 Chain: l
Molecule details ›
Chain: l
Length: 124 amino acids
Theoretical weight: 13.8 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I7R9 (Residues: 1-124; Coverage: 100%)
Gene names: AB57_0911, rpsL
Sequence domains: Ribosomal protein S12/S23
Small ribosomal subunit protein uS13 Chain: m
Molecule details ›
Chain: m
Length: 118 amino acids
Theoretical weight: 13.3 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA17 (Residues: 1-118; Coverage: 100%)
Gene names: AB57_3508, rpsM
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein uS14 Chain: n
Molecule details ›
Chain: n
Length: 101 amino acids
Theoretical weight: 11.44 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA26 (Residues: 1-101; Coverage: 100%)
Gene names: AB57_3517, rpsN
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein uS15 Chain: o
Molecule details ›
Chain: o
Length: 89 amino acids
Theoretical weight: 10.15 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I3U0 (Residues: 1-89; Coverage: 100%)
Gene names: AB57_0438, rpsO
Sequence domains: Ribosomal protein S15
Small ribosomal subunit protein bS16 Chain: p
Molecule details ›
Chain: p
Length: 101 amino acids
Theoretical weight: 11.22 KDa
Source organism: Acinetobacter baumannii
UniProt:
  • Canonical: A0A1V3DIZ9 (Residues: 1-101; Coverage: 100%)
Gene names: AUO97_04820, B9W25_02995, B9X95_19530, CBE85_06365, rpsP
Sequence domains: Ribosomal protein S16
Small ribosomal subunit protein uS17 Chain: q
Molecule details ›
Chain: q
Length: 85 amino acids
Theoretical weight: 9.54 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA30 (Residues: 1-85; Coverage: 100%)
Gene names: AB57_3521, rpsQ
Sequence domains: Ribosomal protein S17
Small ribosomal subunit protein bS18 Chain: r
Molecule details ›
Chain: r
Length: 75 amino acids
Theoretical weight: 9.01 KDa
Source organism: Acinetobacter venetianus
UniProt:
  • Canonical: A0A150HZL5 (Residues: 1-75; Coverage: 100%)
Gene names: AVENLUH13518_00382, AVENLUH5627_01667, AYK86_15270, rpsR
Sequence domains: Ribosomal protein S18
Small ribosomal subunit protein uS19 Chain: s
Molecule details ›
Chain: s
Length: 91 amino acids
Theoretical weight: 10.21 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA35 (Residues: 1-91; Coverage: 100%)
Gene names: AB57_3526, rpsS
Sequence domains: Ribosomal protein S19
Small ribosomal subunit protein bS20 Chain: t
Molecule details ›
Chain: t
Length: 88 amino acids
Theoretical weight: 9.72 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I5N9 (Residues: 1-88; Coverage: 100%)
Gene names: AB57_1842, rpsT
Sequence domains: Ribosomal protein S20
16s Ribosomal RNA Chain: sN1
Molecule details ›
Chain: sN1
Length: 1544 nucleotides
Theoretical weight: 500.3 KDa
Sequence domains: Bacterial small subunit ribosomal RNA

Ligands and Environments

No bound ligands
7 modified residues:
Ligand PSU 1 x PSU
Ligand 7MG 1 x 7MG
Ligand 2MG 2 x 2MG
Ligand 5MC 1 x 5MC
Ligand 4OC 1 x 4OC
Ligand UR3 1 x UR3
Ligand MA6 2 x MA6

Experiments and Validation Details

Entry percentile scores
Resolution: 4.4Å
Relevant EMDB volumes: EMD-21034

Quick links

Citations

7 review citations

Advanced Methods for Studying Structure and Interactions of Macrolide Antibiotics.
Jednačak et al. (2020)
6 more

2 mentions without citation

Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data.
Appasamy et al. (2023)
1 more