› › Structure analysis

Structure of DNA Polymerase Zeta/DNA/dNTP Ternary Complex

Electron Microscopy
3.1Å resolution
PDB entry 6v93 coloured by chain, front view.
PDB entry 6v93 coloured by chain, side view.
PDB entry 6v93 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Assembly composition:
hetero heptamer (preferred)
Entry contents: 4 distinct polypeptide molecules
1 distinct DNA molecule

Quick links

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Assembly Name: DNA polymerase zeta complex and DNA
hide full assembly name
Multimeric state: hetero heptamer
Accessible surface area: 91818.09 Å2
Buried surface area: 28442.59 Å2
Dissociation area: 2,179.08 Å2
Dissociation energy (ΔGdiss): 23.74 kcal/mol
Dissociation entropy (TΔSdiss): 12.26 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-120748

Macromolecules

DNA polymerase zeta catalytic subunit
Chain: A
Length: 1538 amino acids
Theoretical weight: 177.07 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14284 (Residues: 1-1504; Coverage: 100%)
Gene names: P2535, PSO1, REV3, YPL167C
Pfam:
InterPro:
DNA polymerase zeta catalytic subunit in PDB entry 6v93, assembly 1, front view.
DNA polymerase zeta catalytic subunit in PDB entry 6v93, assembly 1, side view.
DNA polymerase zeta catalytic subunit in PDB entry 6v93, assembly 1, top view.
Molecule details ›

Search similar proteins

DNA polymerase zeta processivity subunit
Chains: D, E
Length: 245 amino acids
Theoretical weight: 28.79 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38927 (Residues: 1-245; Coverage: 100%)
Gene names: REV7, YIL139C
Pfam: HORMA domain
InterPro:
DNA polymerase zeta processivity subunit in PDB entry 6v93, assembly 1, front view.
DNA polymerase zeta processivity subunit in PDB entry 6v93, assembly 1, side view.
DNA polymerase zeta processivity subunit in PDB entry 6v93, assembly 1, top view.
Molecule details ›

Search similar proteins

DNA polymerase delta small subunit
Chain: F
Length: 494 amino acids
Theoretical weight: 55.99 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Saccharomyces cerevisiae
UniProt:
  • Canonical: P46957 (Residues: 1-487; Coverage: 100%)
Gene names: HUS2, HYS2, J1427, POL31, SDP5, YJR006W, YJR83.7
Pfam:
InterPro:
DNA polymerase delta small subunit in PDB entry 6v93, assembly 1, front view.
DNA polymerase delta small subunit in PDB entry 6v93, assembly 1, side view.
DNA polymerase delta small subunit in PDB entry 6v93, assembly 1, top view.
Molecule details ›

Search similar proteins

DNA polymerase delta subunit 3
Chain: G
Length: 350 amino acids
Theoretical weight: 40.38 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Saccharomyces cerevisiae
UniProt:
  • Canonical: P47110 (Residues: 1-350; Coverage: 100%)
Gene names: J1626, POL32, YJR043C
DNA polymerase delta subunit 3 in PDB entry 6v93, assembly 1, front view.
DNA polymerase delta subunit 3 in PDB entry 6v93, assembly 1, side view.
DNA polymerase delta subunit 3 in PDB entry 6v93, assembly 1, top view.
Molecule details ›

Search similar proteins

DNA chains P, T
Name: DNA
Representative chains: P, T
Length: 30 nucleotides
Theoretical weight: 9.25 KDa
DNA in PDB entry 6v93, assembly 1, front view.
DNA in PDB entry 6v93, assembly 1, side view.
DNA in PDB entry 6v93, assembly 1, top view.
Molecule details ›

Search similar DNA

Quick links