› 6wh3

Electron Microscopy
2.96Å resolution

Capsid structure of Penaeus monodon metallodensovirus at pH 8.2

Released:
DOI: 10.2210/pdb6wh3/pdb
PDB entry 6wh3 coloured by chain, front view.
PDB entry 6wh3 coloured by chain, side view.
PDB entry 6wh3 coloured by chain, top view.
Source organism: Penaeus monodon metallodensovirus
Primary publication:
Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution.
Pénzes JJ, Pham HT, Chipman P, Bhattacharya N, McKenna R, Agbandje-McKenna M, Tijssen P
Proc Natl Acad Sci U S A 117 20211-20222 (2020)
PMID: 32747554
Related structures: EMD-21667

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-167704 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Penaeus monodon metallodensovirus major capsid protein Chains: 1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
Molecule details ›
Chains: 1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
Length: 369 amino acids
Theoretical weight: 41.13 KDa
Source organism: Penaeus monodon metallodensovirus
Expression system: Spodoptera frugiperda

Ligands and Environments

1 bound ligand:
Ligand CA 60 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.96Å
Relevant EMDB volumes: EMD-21667
Expression system: Spodoptera frugiperda

Quick links

Citations

1 review citation

Recent Advances in Molecular Biology of Human Bocavirus 1 and Its Applications.
Shao et al. (2021)
7 other articles

2 mentions without citation

Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution.
Pénzes et al. (2020)
1 more