6wh3 › Citations

Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution.

Pénzes JJ, Pham HT, Chipman P, Bhattacharya N, McKenna R, Agbandje-McKenna M, Tijssen P
Proc Natl Acad Sci U S A 117 20211-20222 (2020)
Cited: 10 times
EuropePMC logo PMID: 32747554

Abstract

The giant tiger prawn (Penaeus monodon) is a decapod crustacean widely reared for human consumption. Currently, viruses of two distinct lineages of parvoviruses (PVs, family Parvoviridae; subfamily Hamaparvovirinae) infect penaeid shrimp. Here, a PV was isolated and cloned from Vietnamese P. monodon specimens, designated Penaeus monodon metallodensovirus (PmMDV). This is the first member of a third divergent lineage shown to infect penaeid decapods. PmMDV has a transcription strategy unique among invertebrate PVs, using extensive alternative splicing and incorporating transcription elements characteristic of vertebrate-infecting PVs. The PmMDV proteins have no significant sequence similarity with other PVs, except for an SF3 helicase domain in its nonstructural protein. Its capsid structure, determined by cryoelectron microscopy to 3-Å resolution, has a similar surface morphology to Penaeus stylirostris densovirus, despite the lack of significant capsid viral protein (VP) sequence similarity. Unlike other PVs, PmMDV folds its VP without incorporating a βA strand and displayed unique multimer interactions, including the incorporation of a Ca2+ cation, attaching the N termini under the icosahedral fivefold symmetry axis, and forming a basket-like pentamer helix bundle. While the PmMDV VP sequence lacks a canonical phospholipase A2 domain, the structure of an EDTA-treated capsid, determined to 2.8-Å resolution, suggests an alternative membrane-penetrating cation-dependent mechanism in its N-terminal region. PmMDV is an observed example of convergent evolution among invertebrate PVs with respect to host-driven capsid structure and unique as a PV showing a cation-sensitive/dependent basket structure for an alternative endosomal egress.

Articles - 6wh3 mentioned but not cited (2)

  1. Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution. Pénzes JJ, Pham HT, Chipman P, Bhattacharya N, McKenna R, Agbandje-McKenna M, Tijssen P. Proc Natl Acad Sci U S A 117 20211-20222 (2020)
  2. Bipartite genome and structural organization of the parvovirus Acheta domesticus segmented densovirus. Pénzes JJ, Pham HT, Chipman P, Smith EW, McKenna R, Tijssen P. Nat Commun 14 3515 (2023)


Reviews citing this publication (1)

  1. Recent Advances in Molecular Biology of Human Bocavirus 1 and Its Applications. Shao L, Shen W, Wang S, Qiu J. Front Microbiol 12 696604 (2021)

Articles citing this publication (7)

  1. Parvovirus dark matter in the cloaca of wild birds. Dai Z, Wang H, Wu H, Zhang Q, Ji L, Wang X, Shen Q, Yang S, Ma X, Shan T, Zhang W. Gigascience 12 giad001 (2022)
  2. pH-Induced Conformational Changes of Human Bocavirus Capsids. Luo M, Mietzsch M, Chipman P, Song K, Xu C, Spear J, Sousa D, McKenna R, Söderlund-Venermo M, Agbandje-McKenna M. J Virol 95 JVI.02329-20 (2021)
  3. Rapid sample preparation and low-resource molecular detection of hepatopancreatic parvoviruses (HPV) by recombinase polymerase amplification lateral flow detection assay in shrimps (Fenneropenaeus merguiensis). Pollak NM, Fais O, Kristoffersen J, Phuthaworn C, Knibb W, Macdonald J. PLoS One 17 e0276164 (2022)
  4. Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014. Wang J, Xiao J, Zhu Z, Wang S, Zhang L, Fan Z, Deng Y, Hu Z, Peng F, Shen S, Deng F. Virol Sin 37 883-893 (2022)
  5. Current status of infection with infectious hypodermal and hematopoietic necrosis virus (IHHNV) in the Peruvian and Ecuadorian shrimp industry. Aranguren Caro LF, Gomez-Sanchez MM, Piedrahita Y, Mai HN, Cruz-Flores R, Alenton RRR, Dhar AK. PLoS One 17 e0272456 (2022)
  6. Genetic Relatedness of Infectious Hypodermal and Hematopoietic Necrosis Virus Isolates, United States, 2019. Dhar AK, Cruz-Flores R, Warg J, Killian ML, Orry A, Ramos J, Garfias M, Lyons G. Emerg Infect Dis 28 373-381 (2022)
  7. Peptide ligands for the affinity purification of adeno-associated viruses from HEK 293 cell lysates. Chu W, Shastry S, Barbieri E, Prodromou R, Greback-Clarke P, Smith W, Moore B, Kilgore R, Cummings C, Pancorbo J, Gilleskie G, Daniele MA, Menegatti S. Biotechnol Bioeng 120 2283-2300 (2023)


Quick links