6yo0

Electron Microscopy
2.9Å resolution

Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1/peripheral stalk

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dodecamer (preferred)
PDBe Complex ID:
PDB-CPX-125278 (preferred)
Entry contents:
8 distinct polypeptide molecules
Macromolecules (8 distinct):
ATP synthase F1, delta subunit Chain: G1
Molecule details ›
Chain: G1
Length: 219 amino acids
Theoretical weight: 24.78 KDa
Source organism: Tetrahymena thermophila
UniProt:
  • Canonical: I7MMI7 (Residues: 1-219; Coverage: 100%)
Gene name: TTHERM_00684790
Sequence domains: ATP synthase delta (OSCP) subunit
ATP synthase subunit gamma Chain: g1
Molecule details ›
Chain: g1
Length: 299 amino acids
Theoretical weight: 32.92 KDa
Source organism: Tetrahymena thermophila
UniProt:
  • Canonical: Q22Z05 (Residues: 1-299; Coverage: 100%)
Gene name: TTHERM_00118610
Sequence domains: ATP synthase
ATP synthase subunit alpha Chains: A1, B1, C1
Molecule details ›
Chains: A1, B1, C1
Length: 546 amino acids
Theoretical weight: 59.74 KDa
Source organism: Tetrahymena thermophila
UniProt:
  • Canonical: Q24HY8 (Residues: 1-546; Coverage: 100%)
Gene name: TTHERM_00571860
Sequence domains:
ATP synthase subunit beta Chains: D1, E1, F1
Molecule details ›
Chains: D1, E1, F1
Length: 497 amino acids
Theoretical weight: 53.49 KDa
Source organism: Tetrahymena thermophila
UniProt:
  • Canonical: I7LZV1 (Residues: 1-497; Coverage: 100%)
Gene name: TTHERM_00585260
Sequence domains:
Inhibitor of F1 (IF1) Chain: i1
Molecule details ›
Chain: i1
Length: 108 amino acids
Theoretical weight: 12.99 KDa
Source organism: Tetrahymena thermophila
UniProt:
  • Canonical: I7M7C0 (Residues: 1-108; Coverage: 100%)
Gene name: TTHERM_00145490
ATPTT13 Chain: s
Molecule details ›
Chain: s
Length: 145 amino acids
Theoretical weight: 16.82 KDa
Source organism: Tetrahymena thermophila
UniProt:
  • Canonical: I7MLU7 (Residues: 1-145; Coverage: 100%)
Gene name: TTHERM_00444800
Transmembrane protein, putative Chain: b
Molecule details ›
Chain: b
Length: 381 amino acids
Theoretical weight: 43.91 KDa
Source organism: Tetrahymena thermophila
UniProt:
  • Canonical: I7MJ84 (Residues: 1-381; Coverage: 100%)
Gene name: TTHERM_00127260
subunit d Chain: d
Molecule details ›
Chain: d
Length: 234 amino acids
Theoretical weight: 26.75 KDa
Source organism: Tetrahymena thermophila
UniProt:
  • Canonical: Q239R1 (Residues: 1-234; Coverage: 100%)
Gene name: TTHERM_01188360
Sequence domains: ATP synthase D chain, mitochondrial (ATP5H)

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-10862