6zqv

Electron Microscopy
2.6Å resolution

Cryo-EM structure of mature Spondweni virus

Released:

Function and Biology Details

Reactions catalysed:
Selective hydrolysis of -Xaa-Xaa-|-Yaa- bonds in which each of the Xaa can be either Arg or Lys and Yaa can be either Ser or Ala.
NTP + H(2)O = NDP + phosphate
ATP + H(2)O = ADP + phosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 360-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-111846 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Genome polyprotein Chains: A, C, E
Molecule details ›
Chains: A, C, E
Length: 505 amino acids
Theoretical weight: 54.84 KDa
Source organism: Spondweni virus
UniProt:
  • Canonical: C8XPB6 (Residues: 290-794; Coverage: 15%)
Sequence domains:
Genome polyprotein Chains: B, D, F
Molecule details ›
Chains: B, D, F
Length: 75 amino acids
Theoretical weight: 8.45 KDa
Source organism: Spondweni virus
UniProt:
  • Canonical: C8XPB6 (Residues: 215-289; Coverage: 2%)
Sequence domains: Flavivirus envelope glycoprotein M

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, FUC
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.6Å
Relevant EMDB volumes: EMD-11371