7y7j

Electron Microscopy
3.8Å resolution

SARS-CoV-2 S trimer in complex with 1F Fab

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-535516 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1288 amino acids
Theoretical weight: 142.32 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-1208; Coverage: 95%)
Gene names: 2, S
Sequence domains:
1F VH Chain: E
Molecule details ›
Chain: E
Length: 132 amino acids
Theoretical weight: 14.52 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
1F VL Chain: D
Molecule details ›
Chain: D
Length: 111 amino acids
Theoretical weight: 11.72 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-33667
Expression system: Homo sapiens