Structure analysis

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Electron Microscopy
3.08Å resolution
Assembly composition:
hetero 58-mer (preferred)
Entry contents: 52 distinct polypeptide molecules
6 distinct RNA molecules

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Multimeric state: hetero 58-mer
Accessible surface area: 838994.78 Å2
Buried surface area: 349847.7 Å2
Dissociation area: 1,064.08 Å2
Dissociation energy (ΔGdiss): -3.16 kcal/mol
Dissociation entropy (TΔSdiss): 13.49 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-135575

Macromolecules

Chain: 5
Length: 147 amino acids
Theoretical weight: 16.93 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli BL21(DE3)

Search similar proteins

Chain: A
Length: 84 amino acids
Theoretical weight: 9.02 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: B
Length: 271 amino acids
Theoretical weight: 29.66 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: C
Length: 209 amino acids
Theoretical weight: 22.28 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: D
Length: 201 amino acids
Theoretical weight: 22.12 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: E
Length: 177 amino acids
Theoretical weight: 20.07 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: F
Length: 175 amino acids
Theoretical weight: 18.67 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: G
Length: 149 amino acids
Theoretical weight: 15.79 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: H
Length: 130 amino acids
Theoretical weight: 13.98 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: J
Length: 141 amino acids
Theoretical weight: 15.92 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: K
Length: 123 amino acids
Theoretical weight: 13.57 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: L
Length: 144 amino acids
Theoretical weight: 15.01 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: M
Length: 136 amino acids
Theoretical weight: 15.33 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: N
Length: 119 amino acids
Theoretical weight: 13.59 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: O
Length: 115 amino acids
Theoretical weight: 12.55 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: P
Length: 114 amino acids
Theoretical weight: 13.03 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: Q
Length: 117 amino acids
Theoretical weight: 13.4 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: R
Length: 103 amino acids
Theoretical weight: 11.59 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: S
Length: 109 amino acids
Theoretical weight: 12.12 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: T
Length: 94 amino acids
Theoretical weight: 10.66 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: U
Length: 103 amino acids
Theoretical weight: 11.21 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: V
Length: 94 amino acids
Theoretical weight: 10.71 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: X
Length: 77 amino acids
Theoretical weight: 8.9 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: Y
Length: 58 amino acids
Theoretical weight: 6.83 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: Z
Length: 56 amino acids
Theoretical weight: 6.22 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: a
Length: 66 amino acids
Theoretical weight: 7.52 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: b
Length: 54 amino acids
Theoretical weight: 6.13 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: c
Length: 52 amino acids
Theoretical weight: 6.06 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: d
Length: 46 amino acids
Theoretical weight: 5.4 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: e
Length: 64 amino acids
Theoretical weight: 7.18 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: f
Length: 37 amino acids
Theoretical weight: 4.32 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: g
Length: 225 amino acids
Theoretical weight: 25.07 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: h
Length: 208 amino acids
Theoretical weight: 23.25 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: i
Length: 205 amino acids
Theoretical weight: 23.38 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: j
Length: 156 amino acids
Theoretical weight: 16.48 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: k
Length: 104 amino acids
Theoretical weight: 12.13 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: l
Length: 151 amino acids
Theoretical weight: 16.86 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: m
Length: 129 amino acids
Theoretical weight: 14.02 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: n
Length: 126 amino acids
Theoretical weight: 14.4 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: o
Length: 99 amino acids
Theoretical weight: 11.25 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: p
Length: 117 amino acids
Theoretical weight: 12.49 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: q
Length: 123 amino acids
Theoretical weight: 13.68 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: r
Length: 115 amino acids
Theoretical weight: 12.74 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: s
Length: 100 amino acids
Theoretical weight: 11.48 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: t
Length: 87 amino acids
Theoretical weight: 10.07 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: u
Length: 81 amino acids
Theoretical weight: 9.14 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: v
Length: 80 amino acids
Theoretical weight: 9.26 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: w
Length: 65 amino acids
Theoretical weight: 7.61 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: x
Length: 82 amino acids
Theoretical weight: 9.35 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: y
Length: 85 amino acids
Theoretical weight: 9.51 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Chain: z
Length: 70 amino acids
Theoretical weight: 8.39 KDa
Source organism: Escherichia coli K-12

Search similar proteins

Name: 23S ribosomal RNA
Representative chains: 1
Source organism: Escherichia coli K-12 [83333]
Length: 2903 nucleotides
Theoretical weight: 941.53 KDa
Rfam: Bacterial large subunit ribosomal RNA

Search similar RNA

Name: 16S ribosomal RNA
Representative chains: 2
Source organism: Escherichia coli K-12 [83333]
Length: 1540 nucleotides
Theoretical weight: 499.24 KDa
Rfam: Bacterial small subunit ribosomal RNA

Search similar RNA

Name: 5S ribosomal RNA
Representative chains: 3
Source organism: Escherichia coli K-12 [83333]
Length: 120 nucleotides
Theoretical weight: 38.79 KDa
Rfam: 5S ribosomal RNA

Search similar RNA

Name: transfer-messenger RNA (tmRNA)
Representative chains: 4
Source organism: Escherichia coli [562]
Expression system: Escherichia coli [562]
Length: 363 nucleotides
Theoretical weight: 117.21 KDa
Rfam: transfer-messenger RNA

Search similar RNA

Name: tRNA-Phe
Representative chains: 7
Source organism: Escherichia coli [562]
Expression system: Not provided
Length: 76 nucleotides
Theoretical weight: 24.75 KDa
Rfam: tRNA

Search similar RNA

Name: Messenger RNA
Representative chains: 8
Source organism: Escherichia coli [562]
Expression system: Not provided
Length: 15 nucleotides
Theoretical weight: 4.89 KDa

Search similar RNA