Structure analysis

S protein of SARS-CoV-2 in complex bound with P5A-2G9

Electron Microscopy
2.7Å resolution
Assembly composition:
hetero heptamer (preferred)
Entry contents: 3 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero heptamer
Accessible surface area: 179125.83 Å2
Buried surface area: 50581.46 Å2
Dissociation area: 2,586.31 Å2
Dissociation energy (ΔGdiss): -15.05 kcal/mol
Dissociation entropy (TΔSdiss): 30.84 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-105362

Macromolecules

PDBe-KB: UniProt Coverage View: P0DTC2  
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Chains: H, I
Length: 449 amino acids
Theoretical weight: 49.46 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P01772 (Residues: 20-117; Coverage: 100%)
  • Canonical: P0DOX5 (Residues: 99-449; Coverage: 78%)
  • nullnull
Gene name: IGHV3-33
Pfam:
InterPro:
PDBe-KB: UniProt Coverage View: P01772   P0DOX5  
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Chains: L, M
Length: 222 amino acids
Theoretical weight: 23.85 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: A0A5C2GMM2 (Residues: 1-102, 103-115; Coverage: 100%)
  • Canonical: Q8N5F4 (Residues: 128-233; Coverage: 50%)
  • nullnull
Gene name: IGL@
Pfam:
InterPro:
PDBe-KB: UniProt Coverage View: A0A5C2GMM2   Q8N5F4  
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