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SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z291279160

X-ray diffraction
2.05Å resolution
PDB entry 7ft3 coloured by chain, front view.
PDB entry 7ft3 coloured by chain, side view.
PDB entry 7ft3 coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1
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Assembly Name: Syntenin-1
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Multimeric state: monomeric
Accessible surface area: 10422.13 Å2
Buried surface area: 220.35 Å2
Dissociation area: 110.18 Å2
Dissociation energy (ΔGdiss): -1.48 kcal/mol
Dissociation entropy (TΔSdiss): -0.29 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-126342
Assembly 2
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Assembly Name: Syntenin-1
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Multimeric state: monomeric
Accessible surface area: 10316.88 Å2
Buried surface area: 441.25 Å2
Dissociation area: 103.06 Å2
Dissociation energy (ΔGdiss): -2.01 kcal/mol
Dissociation entropy (TΔSdiss): -0.34 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-126342
Assembly 3
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Assembly Name: Syntenin-1
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Multimeric state: monomeric
Accessible surface area: 10544.24 Å2
Buried surface area: 631.71 Å2
Dissociation area: 103.9 Å2
Dissociation energy (ΔGdiss): -1.51 kcal/mol
Dissociation entropy (TΔSdiss): -0.28 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-126342
Assembly 4 (preferred)
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Assembly Name: Syntenin-1
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Multimeric state: monomeric
Accessible surface area: 10322.28 Å2
Buried surface area: 960.55 Å2
Dissociation area: 109.69 Å2
Dissociation energy (ΔGdiss): -2.6 kcal/mol
Dissociation entropy (TΔSdiss): -0.27 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-126342

Macromolecules

Syntenin-1
Chains: A, B, C, D
Length: 195 amino acids
Theoretical weight: 21.43 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O00560 (Residues: 106-298; Coverage: 65%)
Gene names: MDA9, SDCBP, SYCL
Pfam: PDZ domain
InterPro:
Syntenin-1 in PDB entry 7ft3, assembly 4, front view.
Syntenin-1 in PDB entry 7ft3, assembly 4, side view.
Syntenin-1 in PDB entry 7ft3, assembly 4, top view.
PDBe-KB: UniProt Coverage View: O00560  
119520406080100120140160180
 
50100150
UniProt
O00560
Chains
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Secondary structure
Ligand binding sites
Sequence conservation
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