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SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z48847594

X-ray diffraction
2.17Å resolution
PDB entry 7ft4 coloured by chain, front view.
PDB entry 7ft4 coloured by chain, side view.
PDB entry 7ft4 coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1
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Assembly Name: Syntenin-1
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Multimeric state: monomeric
Accessible surface area: 10192.4 Å2
Buried surface area: 215.49 Å2
Dissociation area: 107.75 Å2
Dissociation energy (ΔGdiss): -1.68 kcal/mol
Dissociation entropy (TΔSdiss): -0.31 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-126342
Assembly 2
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Assembly Name: Syntenin-1
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Multimeric state: monomeric
Accessible surface area: 9897.54 Å2
Buried surface area: 447.99 Å2
Dissociation area: 106.85 Å2
Dissociation energy (ΔGdiss): -2.9 kcal/mol
Dissociation entropy (TΔSdiss): -0.29 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-126342
Assembly 3
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Assembly Name: Syntenin-1
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Multimeric state: monomeric
Accessible surface area: 10055.07 Å2
Buried surface area: 638.97 Å2
Dissociation area: 93.93 Å2
Dissociation energy (ΔGdiss): -1.93 kcal/mol
Dissociation entropy (TΔSdiss): -0.27 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-126342
Assembly 4 (preferred)
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Assembly Name: Syntenin-1
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Multimeric state: monomeric
Accessible surface area: 10161.84 Å2
Buried surface area: 798.38 Å2
Dissociation area: 107.36 Å2
Dissociation energy (ΔGdiss): -3.49 kcal/mol
Dissociation entropy (TΔSdiss): -0.42 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-126342

Macromolecules

Syntenin-1
Chains: A, B, C, D
Length: 195 amino acids
Theoretical weight: 21.43 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O00560 (Residues: 106-298; Coverage: 65%)
Gene names: MDA9, SDCBP, SYCL
Pfam: PDZ domain
InterPro:
Syntenin-1 in PDB entry 7ft4, assembly 4, front view.
Syntenin-1 in PDB entry 7ft4, assembly 4, side view.
Syntenin-1 in PDB entry 7ft4, assembly 4, top view.
PDBe-KB: UniProt Coverage View: O00560  
119520406080100120140160180
 
50100150SMAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
UniProt
O00560
Chains
Domains
Secondary structure
Ligand binding sites
Sequence conservation
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