› › Structure analysis

Mouse mitochondrial ribosome small subunit lacking m5U modification

Electron Microscopy
3.09Å resolution
PDB entry 7pnw coloured by chain, front view.
PDB entry 7pnw coloured by chain, side view.
PDB entry 7pnw coloured by chain, top view.
Source organism: Mus musculus
Assembly composition:
hetero 31-mer (preferred)
Entry contents: 30 distinct polypeptide molecules
1 distinct RNA molecule

Quick links

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Assembly Name: Small ribosomal protein
hide full assembly name
Multimeric state: hetero 31-mer
Accessible surface area: 362715.86 Å2
Buried surface area: 208470.67 Å2
Dissociation area: 3,412.9 Å2
Dissociation energy (ΔGdiss): 23.69 kcal/mol
Dissociation entropy (TΔSdiss): 15.77 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-128705

Macromolecules

Small ribosomal subunit protein uS2m
Chain: B
Length: 291 amino acids
Theoretical weight: 32.36 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q924T2 (Residues: 1-291; Coverage: 100%)
Gene name: Mrps2
Pfam: Ribosomal protein S2
InterPro:
Small ribosomal subunit protein uS2m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS2m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS2m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS3m
Chain: C
Length: 167 amino acids
Theoretical weight: 18.93 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CQV5 (Residues: 1-167; Coverage: 100%)
Gene name: Mrps24
Pfam: Mitochondrial ribosome subunit S24
InterPro: Small ribosomal subunit protein uS3m, metazoan
Small ribosomal subunit protein uS3m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS3m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS3m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS5m
Chain: D
Length: 432 amino acids
Theoretical weight: 48.29 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q99N87 (Residues: 1-432; Coverage: 100%)
Gene name: Mrps5
Pfam:
InterPro:
Small ribosomal subunit protein uS5m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS5m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS5m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein bS6m
Chain: E
Length: 125 amino acids
Theoretical weight: 14.33 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P58064 (Residues: 1-125; Coverage: 100%)
Gene names: Mrps6, Rpms6
Pfam: Ribosomal protein S6
InterPro:
Small ribosomal subunit protein bS6m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein bS6m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein bS6m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS7m
Chain: F
Length: 242 amino acids
Theoretical weight: 28.11 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q80X85 (Residues: 1-242; Coverage: 100%)
Gene name: Mrps7
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS7m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS7m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS9m
Chain: G
Length: 390 amino acids
Theoretical weight: 45 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D7N3 (Residues: 1-390; Coverage: 100%)
Gene name: Mrps9
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS9m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS9m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS10m
Chain: H
Length: 160 amino acids
Theoretical weight: 18.73 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q80ZK0 (Residues: 1-160; Coverage: 100%)
Gene name: Mrps10
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS10m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS10m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS11m
Chain: I
Length: 191 amino acids
Theoretical weight: 20.25 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9DCA2 (Residues: 1-191; Coverage: 100%)
Gene name: Mrps11
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS11m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS11m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS12m
Chain: J
Length: 139 amino acids
Theoretical weight: 15.47 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: O35680 (Residues: 1-139; Coverage: 100%)
Gene names: Mrps12, Rpms12
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS12m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS12m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS14m
Chain: K
Length: 128 amino acids
Theoretical weight: 14.95 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CR88 (Residues: 1-128; Coverage: 100%)
Gene name: Mrps14
Pfam: Ribosomal protein S14p/S29e
InterPro: Small ribosomal subunit protein uS14
Small ribosomal subunit protein uS14m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS14m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS14m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS15m
Chain: L
Length: 258 amino acids
Theoretical weight: 29.52 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9DC71 (Residues: 1-258; Coverage: 100%)
Gene names: Mrps15, Rpms15
Pfam: Ribosomal protein S15
InterPro:
Small ribosomal subunit protein uS15m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS15m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS15m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein bS16m
Chain: M
Length: 135 amino acids
Theoretical weight: 15.22 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CPX7 (Residues: 1-135; Coverage: 100%)
Gene names: Mrps16, Rpms16
Pfam: Ribosomal protein S16
InterPro:
Small ribosomal subunit protein bS16m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein bS16m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein bS16m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein uS17m
Chain: N
Length: 120 amino acids
Theoretical weight: 13.41 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CQE3 (Residues: 1-120; Coverage: 100%)
Gene names: Mrps17, Rpms17
Pfam: Ribosomal protein S17
InterPro:
Small ribosomal subunit protein uS17m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein uS17m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein uS17m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS40
Chain: O
Length: 254 amino acids
Theoretical weight: 28.74 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q99N84 (Residues: 1-254; Coverage: 100%)
Gene name: Mrps18b
Pfam: Ribosomal protein S18
InterPro:
Small ribosomal subunit protein mS40 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS40 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS40 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein bS18m
Chain: P
Length: 143 amino acids
Theoretical weight: 16.3 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8R2L5 (Residues: 1-143; Coverage: 100%)
Gene name: Mrps18c
Pfam: Ribosomal protein S18
InterPro:
Small ribosomal subunit protein bS18m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein bS18m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein bS18m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein bS21m
Chain: Q
Length: 86 amino acids
Theoretical weight: 10.49 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P58059 (Residues: 2-87; Coverage: 99%)
Gene names: Mrps21, Rpms21
Pfam: Ribosomal protein S21
InterPro: Small ribosomal subunit protein bS21
Small ribosomal subunit protein bS21m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein bS21m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein bS21m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS22
Chain: R
Length: 359 amino acids
Theoretical weight: 41.26 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CXW2 (Residues: 1-359; Coverage: 100%)
Gene names: Mrps22, Rpms22
Pfam: Mitochondrial 28S ribosomal protein S22
InterPro: Small ribosomal subunit protein mS22
Small ribosomal subunit protein mS22 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS22 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS22 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS23
Chain: S
Length: 177 amino acids
Theoretical weight: 20.38 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8VE22 (Residues: 1-177; Coverage: 100%)
Gene name: Mrps23
Pfam: Mitochondrial ribosomal protein S23
InterPro:
Small ribosomal subunit protein mS23 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS23 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS23 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS25
Chain: T
Length: 171 amino acids
Theoretical weight: 19.95 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D125 (Residues: 1-171; Coverage: 100%)
Gene names: Mrps25, Rpms25
Pfam: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
InterPro:
Small ribosomal subunit protein mS25 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS25 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS25 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS26
Chain: U
Length: 200 amino acids
Theoretical weight: 23.48 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q80ZS3 (Residues: 1-200; Coverage: 100%)
Gene name: Mrps26
Pfam: Mitochondrial ribosome subunit S26
InterPro: Small ribosomal subunit protein mS26
Small ribosomal subunit protein mS26 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS26 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS26 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS27
Chain: V
Length: 415 amino acids
Theoretical weight: 47.84 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8BK72 (Residues: 1-415; Coverage: 100%)
Gene name: Mrps27
Pfam: Mitochondrial 28S ribosomal protein S27
InterPro:
Small ribosomal subunit protein mS27 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS27 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS27 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein bS1m
Chain: W
Length: 186 amino acids
Theoretical weight: 20.56 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CY16 (Residues: 1-186; Coverage: 100%)
Gene name: Mrps28
Pfam: Mitochondrial ribosomal protein MRP-S35
InterPro: Small ribosomal subunit protein bS1m
Small ribosomal subunit protein bS1m in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein bS1m in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein bS1m in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS29
Chain: X
Length: 391 amino acids
Theoretical weight: 44.77 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9ER88 (Residues: 1-391; Coverage: 100%)
Gene names: Dap3, Mrps29
Pfam: Mitochondrial ribosomal death-associated protein 3
InterPro:
Small ribosomal subunit protein mS29 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS29 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS29 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS31
Chain: Y
Length: 384 amino acids
Theoretical weight: 43.95 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q61733 (Residues: 1-384; Coverage: 100%)
Gene names: Imogn38, Mrps31
Pfam: Mitochondrial 28S ribosomal protein S31
InterPro: Mitochondrial 28S ribosomal protein S31
Small ribosomal subunit protein mS31 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS31 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS31 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS33
Chain: Z
Length: 106 amino acids
Theoretical weight: 12.49 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D2R8 (Residues: 1-106; Coverage: 100%)
Gene names: Gdap3, Mrps33
Pfam: Mitochondrial ribosomal subunit S27
InterPro: Small ribosomal subunit protein mS33
Small ribosomal subunit protein mS33 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS33 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS33 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS34
Chain: 0
Length: 218 amino acids
Theoretical weight: 25.87 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9JIK9 (Residues: 1-218; Coverage: 100%)
Gene names: Mrps34, Tce2
Pfam: Mitochondrial 28S ribosomal protein S34
InterPro: Small ribosomal subunit protein mS34
Small ribosomal subunit protein mS34 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS34 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS34 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS35
Chain: 1
Length: 320 amino acids
Theoretical weight: 36.03 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8BJZ4 (Residues: 1-320; Coverage: 100%)
Gene name: Mrps35
Pfam: Mitochondrial ribosomal subunit protein
InterPro:
Small ribosomal subunit protein mS35 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS35 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS35 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS37
Chain: 2
Length: 117 amino acids
Theoretical weight: 13.54 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CQA6 (Residues: 2-118; Coverage: 99%)
Gene names: Chchd1, Mrps37
Pfam: CHCH domain
InterPro:
Small ribosomal subunit protein mS37 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS37 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS37 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS38
Chain: 3
Length: 200 amino acids
Theoretical weight: 23.35 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9DCJ7 (Residues: 1-200; Coverage: 100%)
Gene names: Aip, Akip, Aurkaip1, Mrps38
Pfam: Mitochondrial mRNA-processing protein COX24, C-terminal
InterPro: Ribosomal protein mS38, C-terminal
Small ribosomal subunit protein mS38 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS38 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS38 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

Small ribosomal subunit protein mS39
Chain: 4
Length: 685 amino acids
Theoretical weight: 77.89 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q14C51 (Residues: 1-685; Coverage: 100%)
Gene names: Mrps39, Ptcd3
Pfam:
InterPro:
Small ribosomal subunit protein mS39 in PDB entry 7pnw, assembly 1, front view.
Small ribosomal subunit protein mS39 in PDB entry 7pnw, assembly 1, side view.
Small ribosomal subunit protein mS39 in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar proteins

RNA chain A
Name: 12S mitochondrial rRNA
Representative chains: A
Length: 956 nucleotides
Theoretical weight: 306.88 KDa
Rfam: Microsporidia small subunit ribosomal RNA
12S mitochondrial rRNA in PDB entry 7pnw, assembly 1, front view.
12S mitochondrial rRNA in PDB entry 7pnw, assembly 1, side view.
12S mitochondrial rRNA in PDB entry 7pnw, assembly 1, top view.
Molecule details ›

Search similar RNA

Quick links