Structure analysis

Structure of the Candida albicans 80S ribosome in complex with anisomycin

Electron Microscopy
2.77Å resolution
Source organism: Candida albicans SC5314
Assembly composition:
hetero 80-mer (preferred)
Entry contents: 75 distinct polypeptide molecules
5 distinct RNA molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 80-mer
PDBe Complex ID: PDB-CPX-249468

Macromolecules

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Chain: t
Length: 202 amino acids
Theoretical weight: 23.11 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: O59931 (Residues: 1-202; Coverage: 100%)
Gene names: CAALFM_C103020CA, Ca49C10.02, CaO19.10511, CaO19.2994, RPL13
Pfam: Ribosomal protein L13e
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Chain: 0
Length: 172 amino acids
Theoretical weight: 20.38 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PLC9 (Residues: 1-172; Coverage: 100%)
Gene names: CAALFM_C401520CA, RPL20, RPL20B, orf19.4632
Pfam: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
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Chain: 5
Length: 124 amino acids
Theoretical weight: 14.11 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PM41 (Residues: 1-124; Coverage: 100%)
Gene names: CAALFM_C404390WA, RPL22B, orf19.1409.1
Pfam: Ribosomal L22e protein family
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Chain: 6
Length: 137 amino acids
Theoretical weight: 14.51 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PPT5 (Residues: 1-137; Coverage: 100%)
Gene names: CAALFM_C602070CA, RPL23A, RPL23B, orf19.3504
Pfam: Ribosomal protein L14p/L23e
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Chain: 7
Length: 155 amino acids
Theoretical weight: 17.43 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: Q5A6A1 (Residues: 1-155; Coverage: 100%)
Gene names: CAALFM_C404890CA, RPL24, RPL24A, orf19.3789
Pfam: Ribosomal protein L24e
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Chain: AC
Length: 63 amino acids
Theoretical weight: 7.14 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PF57 (Residues: 1-63; Coverage: 100%)
Gene names: CAALFM_C111040WA, RPL29, orf19.2310.1
Pfam: Ribosomal L29e protein family
InterPro: Large ribosomal subunit protein eL29

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Chain: AE
Length: 112 amino acids
Theoretical weight: 12.99 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PHF5 (Residues: 1-112; Coverage: 100%)
Gene names: CAALFM_C205410WA, RPL31B, orf19.3572.3
Pfam: Ribosomal protein L31e
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Chain: AF
Length: 131 amino acids
Theoretical weight: 14.99 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PPN6 (Residues: 1-131; Coverage: 100%)
Gene names: CAALFM_C601700WA, RPL32
Pfam: Ribosomal protein L32
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Chain: AH
Length: 122 amino acids
Theoretical weight: 13.77 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PDZ1 (Residues: 1-122; Coverage: 100%)
Gene names: CAALFM_C106890CA, RPL34B, orf19.6220.4
Pfam: Ribosomal protein L34e
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Chain: AI
Length: 120 amino acids
Theoretical weight: 14.12 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PK30 (Residues: 1-120; Coverage: 100%)
Gene names: CAALFM_C304960WA, RPL35, orf19.5964.2
Pfam: Ribosomal L29 protein
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Chain: AJ
Length: 99 amino acids
Theoretical weight: 11.1 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PH21 (Residues: 1-99; Coverage: 100%)
Gene names: CAALFM_C203960WA, RPL36
Pfam: Ribosomal protein L36e
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Chain: AK
Length: 90 amino acids
Theoretical weight: 10.1 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PF45 (Residues: 1-90; Coverage: 100%)
Gene names: CAALFM_C111360WA, RPL37B, orf19.667.1
Pfam: Ribosomal protein L37e
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Chain: AL
Length: 78 amino acids
Theoretical weight: 8.91 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PG16 (Residues: 1-78; Coverage: 100%)
Gene names: CAALFM_C200210WA, RPL38, orf19.2111.2
Pfam: Ribosomal L38e protein family
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Chain: AP
Length: 106 amino acids
Theoretical weight: 12.29 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PEV4 (Residues: 1-106; Coverage: 100%)
Gene names: CAALFM_C110390CA, RPL42, RPL44, orf19.4909.1
Pfam: Ribosomal protein L44
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Chain: AQ
Length: 92 amino acids
Theoretical weight: 10.14 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PP14 (Residues: 1-92; Coverage: 100%)
Gene names: CAALFM_C504590CA, RPL43A, orf19.3942.1
Pfam: Ribosomal L37ae protein family
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Chain: i
Length: 267 amino acids
Theoretical weight: 29.13 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PK71 (Residues: 1-267; Coverage: 100%)
Gene names: CAALFM_C304810CA, STM1, orf19.5943.1
Pfam: Stm1
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Chain: C
Length: 256 amino acids
Theoretical weight: 29.04 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: P40910 (Residues: 1-256; Coverage: 100%)
Gene names: CAALFM_C103090WA, CaO19.10520, CaO19.3002, PLC1, RP10, RPS1, RPS10
Pfam: Ribosomal S3Ae family
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Chain: H
Length: 236 amino acids
Theoretical weight: 27.15 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PL99 (Residues: 1-236; Coverage: 100%)
Gene names: CAALFM_C401270WA, RPS6A, orf19.4660
Pfam: Ribosomal protein S6e
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Chain: I
Length: 186 amino acids
Theoretical weight: 21.29 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: Q5AJ93 (Residues: 1-186; Coverage: 100%)
Gene names: CAALFM_C301490WA, RPS7A, orf19.1700
Pfam: Ribosomal protein S7e
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Chain: L
Length: 118 amino acids
Theoretical weight: 13.84 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PI15 (Residues: 1-118; Coverage: 100%)
Gene names: CAALFM_C208040CA, RPS10, orf19.2179.2
Pfam: Plectin/S10 domain
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Chain: P
Length: 132 amino acids
Theoretical weight: 14.05 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PDT3 (Residues: 1-132; Coverage: 100%)
Gene names: CAALFM_C106450CA, RPS14B, orf19.6265.1
Pfam: Ribosomal protein S11
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Chain: S
Length: 137 amino acids
Theoretical weight: 15.77 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PEY9 (Residues: 1-137; Coverage: 100%)
Gene names: CAALFM_C110870WA, RPS17B, orf19.2329.1
Pfam: Ribosomal S17
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Chain: U
Length: 145 amino acids
Theoretical weight: 16.1 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PK61 (Residues: 1-145; Coverage: 100%)
Gene names: CAALFM_C305200WA, RPS19A, orf19.5996.1
Pfam: Ribosomal protein S19e
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Chain: W
Length: 87 amino acids
Theoretical weight: 9.65 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PCG7 (Residues: 1-87; Coverage: 100%)
Gene names: CAALFM_C101370CA, RPS21B
Pfam: Ribosomal protein S21e
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Chain: X
Length: 130 amino acids
Theoretical weight: 14.81 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: P0CU35 (Residues: 1-130; Coverage: 100%)
Gene names: CAALFM_C103620CA, RPS22B, orf19.3061.1
Pfam: Ribosomal protein S8
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Chain: Y
Length: 145 amino acids
Theoretical weight: 16 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PDU3 (Residues: 1-145; Coverage: 100%)
Gene names: CAALFM_C106580WA, RPS23A, orf19.6253
Pfam: Ribosomal protein S12/S23
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Chain: Z
Length: 135 amino acids
Theoretical weight: 15.55 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: Q5A7K0 (Residues: 1-135; Coverage: 100%)
Gene names: CAALFM_C300090WA, RPS24, orf19.5466
Pfam: Ribosomal protein S24e
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Chain: a
Length: 105 amino acids
Theoretical weight: 11.63 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PNQ6 (Residues: 1-105; Coverage: 100%)
Gene names: CAALFM_C503540CA, RPS25B, orf19.6663
Pfam: S25 ribosomal protein
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Chain: b
Length: 119 amino acids
Theoretical weight: 13.61 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: Q5ALV6 (Residues: 1-119; Coverage: 100%)
Gene names: CAALFM_C201610CA, RPS26A, orf19.1470
Pfam: Ribosomal protein S26e
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Chain: c
Length: 82 amino acids
Theoretical weight: 8.98 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PTI7 (Residues: 1-82; Coverage: 100%)
Gene names: CAALFM_CR07630CA, RPS27, orf19.6286.2
Pfam: Ribosomal protein S27
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Chain: d
Length: 67 amino acids
Theoretical weight: 7.54 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PQN0 (Residues: 1-67; Coverage: 100%)
Gene names: CAALFM_C700710WA, RPS28B, orf19.7048.1
Pfam: Ribosomal protein S28e
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Chain: f
Length: 63 amino acids
Theoretical weight: 7.13 KDa
Source organism: Candida albicans SC5314
UniProt:
  • Canonical: A0A1D8PSK2 (Residues: 1-63; Coverage: 100%)
Gene names: CAALFM_CR03770CA, RPS30, orf19.4375.1
Pfam: Ribosomal protein S30
InterPro: Small ribosomal subunit protein eS30

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Name: 25S ribosomal RNA
Representative chains: 1
Length: 3359 nucleotides
Theoretical weight: 1085.31 KDa
Rfam: Eukaryotic large subunit ribosomal RNA

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Name: 5S ribosomal RNA
Representative chains: 3
Length: 121 nucleotides
Theoretical weight: 38.94 KDa
Rfam: 5S ribosomal RNA

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Name: 5.8S ribosomal RNA
Representative chains: 4
Length: 158 nucleotides
Theoretical weight: 50.68 KDa
Rfam: 5.8S ribosomal RNA

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Name: Mixture of endogenous E-tRNA
Representative chains: 10
Length: 77 nucleotides
Theoretical weight: 24.73 KDa
Rfam: tRNA

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Name: 18S Ribosomal RNA
Representative chains: A
Length: 1787 nucleotides
Theoretical weight: 575.84 KDa
Rfam: Eukaryotic small subunit ribosomal RNA

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