7tm3

Electron Microscopy
3.25Å resolution

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 54-mer (preferred)
PDBe Complex ID:
PDB-CPX-243873 (preferred)
Entry contents:
50 distinct polypeptide molecules
4 distinct RNA molecules
Macromolecules (54 distinct):
Large ribosomal subunit protein uL2 Chain: A
Molecule details ›
Chain: A
Length: 257 amino acids
Theoretical weight: 28.09 KDa
Source organism: Oryctolagus cuniculus
Nascent chain Chain: B
Molecule details ›
Chain: B
Length: 229 amino acids
Theoretical weight: 23.49 KDa
Source organism: Oryctolagus cuniculus
Large ribosomal subunit protein uL4 Chain: C
Large ribosomal subunit protein uL18 Chain: D
Large ribosomal subunit protein eL6 Chain: E
Large ribosomal subunit protein uL30 Chain: F
Large ribosomal subunit protein eL8 Chain: G
Large ribosomal subunit protein uL6 Chain: H
Large ribosomal subunit protein uL16 Chain: I
Large ribosomal subunit protein uL5 Chain: J
eL13 Chain: L
Large ribosomal subunit protein eL14 Chain: M
Large ribosomal subunit protein eL15 Chain: N
uL13 Chain: O
Large ribosomal subunit protein uL22 Chain: P
eL18 Chain: Q
Ribosomal protein L19 Chain: R
eL20 Chain: S
Large ribosomal subunit protein eL21 Chain: T
Large ribosomal subunit protein eL22 Chain: U
Large ribosomal subunit protein uL14 Chain: V
Large ribosomal subunit protein eL24 Chain: W
Large ribosomal subunit protein uL23 Chain: X
Large ribosomal subunit protein uL24 Chain: Y
Large ribosomal subunit protein eL27 Chain: Z
Large ribosomal subunit protein uL15 Chain: a
Large ribosomal subunit protein eL29 Chain: b
Large ribosomal subunit protein eL30 Chain: c
Large ribosomal subunit protein eL31 Chain: d
Large ribosomal subunit protein eL32 Chain: e
Large ribosomal subunit protein eL33 Chain: f
Large ribosomal subunit protein eL34 Chain: g
Large ribosomal subunit protein uL29 Chain: h
Large ribosomal subunit protein eL36 Chain: i
Large ribosomal subunit protein eL37 Chain: j
Large ribosomal subunit protein eL38 Chain: k
Large ribosomal subunit protein eL39 Chain: l
eL40 Chain: m
Small ribosomal subunit protein eS32 Chain: n
Large ribosomal subunit protein eL42 Chain: o
Large ribosomal subunit protein eL43 Chain: p
Large ribosomal subunit protein eL28 Chain: r
Large ribosomal subunit protein uL3 Chain: w
Protein transport protein Sec61 subunit alpha isoform 1 Chain: 1
Protein transport protein Sec61 subunit beta Chain: 2
Protein transport protein Sec61 gamma Chain: 3
PAT complex subunit CCDC47 Chain: 4
PAT complex subunit Asterix Chain: 5
Nicalin Chain: 7
BOS complex subunit TMEM147 Chain: 6
P-site tRNA Chain: q
5S ribosomal RNA Chain: u
5.8S ribosomal RNA Chain: v
28S ribosomal RNA Chain: K

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.25Å
Relevant EMDB volumes: EMD-25994