Assemblies
Assembly Name:
SARS-CoV-2 post-fusion S2 Spike complex and antibody
Multimeric state:
hetero nonamer
Accessible surface area:
167431.84 Å2
Buried surface area:
57213.06 Å2
Dissociation area:
5,660.28
Å2
Dissociation energy (ΔGdiss):
-27.14
kcal/mol
Dissociation entropy (TΔSdiss):
75.37
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-210320
Macromolecules
Chains: A, B, C
Length: 1256 amino acids
Theoretical weight: 139.34 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
Pfam:
Length: 1256 amino acids
Theoretical weight: 139.34 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
- Canonical:
P0DTC2 (Residues: 1-1213; Coverage: 95%)
Pfam:
- Betacoronavirus-like spike glycoprotein S1, N-terminal
- Betacoronavirus spike glycoprotein S1, receptor binding
- Coronavirus spike glycoprotein S1, C-terminal
- Coronavirus spike glycoprotein S2
- Spike glycoprotein, betacoronavirus
- Spike glycoprotein S1, N-terminal domain, betacoronavirus-like
- Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-like
- Spike glycoprotein, N-terminal domain superfamily
- Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2
- Spike S1 subunit, receptor binding domain superfamily, betacoronavirus
- Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirus
- Coronavirus spike glycoprotein S1, C-terminal
- Spike glycoprotein S2, coronavirus
- Spike glycoprotein S2, coronavirus, heptad repeat 1
- Spike glycoprotein S2 superfamily, coronavirus
- Spike glycoprotein S2, coronavirus, heptad repeat 2
- Fibritin C-terminal
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P0DTC2
PRO_0000449647
PRO_0000449648
PRO_0000449649
Chains
Domains
Secondary structure
Ligand binding sites
Interaction interfaces
Sequence conservation
Chains: H, M, O
Length: 233 amino acids
Theoretical weight: 25.18 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Length: 233 amino acids
Theoretical weight: 25.18 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Chain D (auth H)
Chain F (auth M)
Chain H (auth O)
Domains
Secondary structure
Ligand binding sites
Interaction interfaces
Sequence conservation
Chains: L, N, P
Length: 217 amino acids
Theoretical weight: 23.11 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Length: 217 amino acids
Theoretical weight: 23.11 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Chain E (auth L)
Chain G (auth N)
Chain I (auth P)
Domains
Secondary structure
Ligand binding sites
Interaction interfaces
Sequence conservation