Structure analysis

Structure of the SARS-CoV-2 S 6P trimer in complex with the neutralizing antibody Fab fragment, C1520

Electron Microscopy
2.8Å resolution
Assembly composition:
hetero nonamer (preferred)
Entry contents: 3 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero nonamer
Accessible surface area: 167431.84 Å2
Buried surface area: 57213.06 Å2
Dissociation area: 5,660.28 Å2
Dissociation energy (ΔGdiss): -27.14 kcal/mol
Dissociation entropy (TΔSdiss): 75.37 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-210320

Macromolecules

PDBe-KB: UniProt Coverage View: P0DTC2  
112561002003004005006007008009001,0001,1001,200
 
5001000MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPASVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPSGRLVPRGSPGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH
UniProt
P0DTC2
PRO_0000449647
PRO_0000449648
PRO_0000449649
Chains
Domains
Secondary structure
Ligand binding sites
Interaction interfaces
Sequence conservation

Search similar proteins

123320406080100120140160180200220
 
100200EVQLVESGGGLVQPGGSLRLACVASGFTFSIYEMNWVRQAPGKGLEWVSYITTSGHARYNADSVKGRFTISRDNSKNSFYLQMNSLRAEDTAIYYCARPQYHYYDTSTYHSYGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
Chains
Chain D (auth H)
Chain F (auth M)
Chain H (auth O)
Domains
Secondary structure
Ligand binding sites
Interaction interfaces
Sequence conservation

Search similar proteins

121720406080100120140160180200
 
100200QLVLTQSPSASASLGASVNLTCTLSSGHNSYAIAWHQQQPEKGPRYLMSLNSDGSHTKGDGIPDRFSGSSSGAERFLTISSLQSEDEADYYCQTWDTGIRVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTP*QWKSHRSYSCQVTHEGSTVEKTVAPTECS
Chains
Chain E (auth L)
Chain G (auth N)
Chain I (auth P)
Domains
Secondary structure
Ligand binding sites
Interaction interfaces
Sequence conservation

Search similar proteins